Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1600 ATGGGTGATGTCCTAAGTCCCTTCACAGTCTCTCCTCCTCCTCCTCCTTCTTCTTCCCCCAATTCCAGCATGGCCATGCTATACTATGGCCTCGCAGTGGTGGGAACTGCAGCCATAGTGTTAGCCATGTACAACCTCATCATCGTCCGACGGTGCAGCCGCCGCCACGTGCAATCGCATCCCCGACGGTCAGACGATCGGCCGGTGGAGGCGATGATCACTTCAAGTAGCAGTAGGAATTTTGAAAGCTCGAACAGGAACTTGCTCTCAAGCTTCAAGTACAAGAAAGAAGCAGCAGTAATAGAAGAAGAAGGAAGAGGTGAGGATTATGAATGCCCAGTTTGCTTGTCGGTGTTTGAAGAAGGTGAGGAGGTGAGGAAGCTTCCTCGCTGTAACCACTCCTTCCATGCGGTTTGTATAGATATGTGGCTTCACTCTCACTTGGATTGCCCAATTTGTCGAACACCTGTAGGGCACTCTTCTCTGAGTTTGCCGGCACAGCAGAATTCGCAAGAGTCGAGTGTATCAGCTTGA 534 0.5094 MGDVLSPFTVSPPPPPSSSPNSSMAMLYYGLAVVGTAAIVLAMYNLIIVRRCSRRHVQSHPRRSDDRPVEAMITSSSSRNFESSNRNLLSSFKYKKEAAVIEEEGRGEDYECPVCLSVFEEGEEVRKLPRCNHSFHAVCIDMWLHSHLDCPICRTPVGHSSLSLPAQQNSQESSVSA 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1600 177 MobiDBLite consensus disorder prediction 1 21 - -
Dere03g1600 177 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 23 157 IPR044675 -
Dere03g1600 177 SMART ring_2 112 153 IPR001841 -
Dere03g1600 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 158 IPR013083 -
Dere03g1600 177 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Dere03g1600 177 FunFam RING-H2 finger protein ATL1 68 159 - -
Dere03g1600 177 CDD RING-H2_EL5-like 111 154 - -
Dere03g1600 177 Pfam Ring finger domain 111 154 IPR001841 -
Dere03g1600 177 SUPERFAMILY RING/U-box 101 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1600 Dere-ChrDere03 26535640 26536173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1600 31 157 C3H Transcription Factor Family AT5G17600 37.778 1.49e-21 88.2