Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1565 ATGCGAAATTCTTCCACCAAGAAAAGCAAGAATACTGCCAACACGACATGCAGGGCTGAGTCACGTGACCATCGCCTACTGTTTAAGTCTCGGGGACCACCTGCCTTTGCCAAGGTCACCTGTGCAGAGAGGAATGCCTCTCCGGAAATGGACACACCAGAGGCCAACCGAGTCGACACTCCTCGCTCTAAATTTGAGGATTCAACTATATTCAGCTACATCAATAATCTTTCTCCAATAAAGCCAGTTAAGTCTGTTCACCTTACTCAGACATTCAGCTCCCTTAGCTTTCTGTCCCCTCCATCAGTTTTCACGTCACCCCATGTCAGTTGTCACAAGGAATTTAGATTCCTTAGGAGGCATACTCTTTTAGAGGCACAAAAACCAAAGGTTTCATCTGAATGCGGGAATATAATCTGTTCAAGTGAGGATCTTCTTTCAGATTCAAATCATGCATATCATACCTCAGGTGAGCTACAGGAAAATACTGATCAAGGGATTTCCGTAGGGGATGCTTTGATTGAGTCATCGAGTGATTGGACAAAGTTCACAATGGAGATACAAAAAACTCTGGAATATGATTGCGGTAGCCCTATTTATGATCCTACGCCTTGTGATGAGACAAATTTTCTTTTGGAATTGCCTGGTGAGTTGGCATCAAATGTTGCCTGTGTTCATGAAGCCTATGAAAAGGATTCAACTAAGTATGAAGTGCACCTTCAGGGACAACGTCAGCAGCCAATAATTGAAGGGCCAGGATGTGATTGGGAGAATCTTATTCCTGATGGCGCTGATCCGTTAATTTTTAACTCCTCCAATGAAACAGAGGCTTTTCAGGGTCTAATGGAGAAATCATTGGTACCCTCAATTCGACTGAGCAATTTAATGACTCAGTTGCCACAAACTACCGTCAATTATGGCAGGAAAATGCACATTGTTGATCTAGTTCCTTCTGGTTTAGAAGATGCAAAGGAAGGCCAACCTTCTAAACCAAAAGCAGCCACAGAGACTGACCAGATGCAGGAAAATATTTCCGATGTAGCTGTTATGGCTAGCTATCTGAATGAGAAGATGTATAATGAGCATATTTCTGTAACGCATCGCGGTATGCTGAGGCGCTGTCTAGACTTTGAGATGGCTGGGAAGCAAAAGAAGAGCTCAGAAGGTGGTTCAAATACCAGTTACAGAACATCACAATCTGATGGGAGGAGTATTCCTAATGATAAGCTTACAACATGCAATGTTGATTCACAGGGGTGCATTTTGCCTGGAATTGGTTTACACTTGAATGCTCTTGCGACCTTAAATGACTACAAAATGATCAATAATGATGATTTGCCCCATAGAAGACGATCCAGTCTGTTGAACTCTGCTTTTTCCTTGCATCCCTCTGCAAGCCAGCAGCAGCATCAAATATCAGTCTCTGCATCATCTGTAAGTGACTTAGGTTATCAAAAAAATGGGGCTCAGCGTGCTGAAGATTGTTCCCAGCCTTCAGCATACATTCTTGGTGAAGGTTTTAATCAGAATAGCCCCAAAAAGAAAAGGCGTAAGTTGGAGCCTGCCGGAGAAGGTGAAGCTTGCAAGCGCTGCAAATGTAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGTGTCTACTGCACAGGACCTTGCTCCTGTCAGGATTGCTTCAACAAACCACTTCATTCAGATACTGTGCTTGCAACTCGCAAGCAGATCGAGTCTCGTAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAGTGCTGATTCTTTACATGAAATTGGGGTTGACCCTAACAAAACTCCAGCTTCAGCACGACACAAGAGAGGATGCAACTGCAAGAAATCTGGCTGCCTAAAGAAATATTGTGAATGTTACCAGGGTGGTGCTGGTTGCTCCATTGGCTGTAGATGTGAAGGGTGCAAGAACACATATGGTAGAAAGGATGGTTCTTCCACTTTAAGAATAGAAGCTGAACCAGAAGAAACAGAACCCTCTGAAATGCGTATGGCGGAAAAAGCTTCACAGAAAACTGAAATTCAGAATGACGAAGACCATTCAGATTCTGCTCTTCTTTCAACACCTTTACGGCATTGCAGATCATTGCTTCCGTTGCCCATTTCATCAGAGGGAAGACCACCAAGATCGTTCATTACTACAACATCTGCTTCCGGGTTGTATGCCAGCCACCAACTCGAGAAACCCAGCATCATTCGGTCTCATCCGAAGTTTGTAAAGAATTTTCCAAGCATTCCAGAAGATGAAATGCCGGAGATTCTCCAAGTCTGGCCTGCAAGCCTTCCTGCTCTTTTCCTTGCTGGCCGTTGGCCAGGCCAGGTCTCCGATCGATTAGAAGCATGA 2379 0.4405 MRNSSTKKSKNTANTTCRAESRDHRLLFKSRGPPAFAKVTCAERNASPEMDTPEANRVDTPRSKFEDSTIFSYINNLSPIKPVKSVHLTQTFSSLSFLSPPSVFTSPHVSCHKEFRFLRRHTLLEAQKPKVSSECGNIICSSEDLLSDSNHAYHTSGELQENTDQGISVGDALIESSSDWTKFTMEIQKTLEYDCGSPIYDPTPCDETNFLLELPGELASNVACVHEAYEKDSTKYEVHLQGQRQQPIIEGPGCDWENLIPDGADPLIFNSSNETEAFQGLMEKSLVPSIRLSNLMTQLPQTTVNYGRKMHIVDLVPSGLEDAKEGQPSKPKAATETDQMQENISDVAVMASYLNEKMYNEHISVTHRGMLRRCLDFEMAGKQKKSSEGGSNTSYRTSQSDGRSIPNDKLTTCNVDSQGCILPGIGLHLNALATLNDYKMINNDDLPHRRRSSLLNSAFSLHPSASQQQHQISVSASSVSDLGYQKNGAQRAEDCSQPSAYILGEGFNQNSPKKKRRKLEPAGEGEACKRCKCKKSKCLKLYCECFAAGVYCTGPCSCQDCFNKPLHSDTVLATRKQIESRNPLAFAPKVIRSADSLHEIGVDPNKTPASARHKRGCNCKKSGCLKKYCECYQGGAGCSIGCRCEGCKNTYGRKDGSSTLRIEAEPEETEPSEMRMAEKASQKTEIQNDEDHSDSALLSTPLRHCRSLLPLPISSEGRPPRSFITTTSASGLYASHQLEKPSIIRSHPKFVKNFPSIPEDEMPEILQVWPASLPALFLAGRWPGQVSDRLEA 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1565 792 SMART CXC_2 526 567 IPR033467 -
Dere03g1565 792 SMART CXC_2 612 653 IPR033467 -
Dere03g1565 792 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 50 767 IPR044522 GO:0003700
Dere03g1565 792 MobiDBLite consensus disorder prediction 661 695 - -
Dere03g1565 792 ProSiteProfiles CRC domain profile. 527 652 IPR005172 -
Dere03g1565 792 MobiDBLite consensus disorder prediction 1 16 - -
Dere03g1565 792 MobiDBLite consensus disorder prediction 381 409 - -
Dere03g1565 792 MobiDBLite consensus disorder prediction 661 692 - -
Dere03g1565 792 MobiDBLite consensus disorder prediction 385 409 - -
Dere03g1565 792 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 529 564 IPR005172 -
Dere03g1565 792 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 615 650 IPR005172 -
Dere03g1565 792 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1565 Dere-ChrDere03 26035679 26048091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1565 60 770 CPP Transcription Factor Family AT3G22780 38.714 1.61e-131 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Dere03g1565 TCR 4.9e-11 No_clan