Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1555 ATGACAGAAGACGAAACGGTGAAGGTCAAGAGGACGAAGCTCACGTCATGCTTGACGTGCCCTTTGTGTGATAAATTCTTCAGAGACGCCACCACTATATCAGAATGCTTGCATACCTTTTGCAGGGAATGCATATTTAAGAAGCTAGGAGATGAGAATTTAAGGCAGTGTCCAGTATGCAAAGTAGACCTGGGTTGTTTTCCACTGGGAAAACTAAGGGCAGATCACAATCTGCAGGATTTGAGGGAGAAACTTTTCCCTCATGAGGGAAAAAGTGACAAGACACCTGAGAGTGTGCCTTCATTTACATTGCGAACCAAAAAAAAGGAGAGATCTCTGTCTTCATTAGGCGCCAATCCAACTAAACTATCTAGCCATTCTAGTATTTGTGCAAGAAGGGCGAAAACTGCTGCAAAAAAAGCTGCAGCTGAAAAAGAAGCTGCTCGCTCTACTGTTCAATCTGATAAAAAATCAGATGGTAAGAAAGATGACAGACACAGAGAGATAGAAATTTTGATAGATATTCCAAGAAATTTATCAAGAACAAAATCTGCAGCAAGGAAAAAATTCCTTCCAAGAGAACACATTCCATCAACAAGTCAACCTCACCAATCAGCAGTAGATAACAAGAAAGACCAGGAGCACTGTGAGCTTGACACTGAAAATGTAATAAGTGGAGTTAAGCAGAATTCTTTAGAACCAGAGTTAAGCCACCAGAAAGCGCCCAATGAAAATTCTGAGAACAATGCTGAGTTATGGAAAGGAAAGACTAGTATATGGGAGCCCTTAAACTTTCTGATGGAAGCTGCGCAAAAAGCAAATTCTTCTGAGTCCATCAAAATGCAAGAAAATGCTGACACTGCAATGCCTGTTGATCCTTGTGACAAGGACTTCCGTGTGCCTAGAGTTGAAGTTAAGAATCGTAACAAAACAAAAGTAGCTGGTGATCCTACAGTGGAAGTTAAGCACCGTAACAAAACAAAAGTAGCTGGAGCTTCTACAGTGGAAGTTAAGAATCGTAACAAAACAAAAGTAGCTAGTGATCAAAATGAGGCTACTCCAGTACAGCAAGATTCCATCAAAAGTAAGAGGTTGCGGAGCAGCCAACCAGAAAGAGTAAAATTCTCACAGGATTTAAATGTTCCAGCACAACCTGTGGAGATCTCATTAAGAGGTCGTCCAGTTTTACCTTCACTTCAACTGCACAACTTAGTAGACATGTGGTCTGAGACAGTGCCTAAGTCTGAGAAGATGCGTTCGTTTGTTGGCAGCTCTGCAAAAGATTTTGTGATGGTTCTTTCATACGGTCGAAAGGCTTAG 1320 0.4129 MTEDETVKVKRTKLTSCLTCPLCDKFFRDATTISECLHTFCRECIFKKLGDENLRQCPVCKVDLGCFPLGKLRADHNLQDLREKLFPHEGKSDKTPESVPSFTLRTKKKERSLSSLGANPTKLSSHSSICARRAKTAAKKAAAEKEAARSTVQSDKKSDGKKDDRHREIEILIDIPRNLSRTKSAARKKFLPREHIPSTSQPHQSAVDNKKDQEHCELDTENVISGVKQNSLEPELSHQKAPNENSENNAELWKGKTSIWEPLNFLMEAAQKANSSESIKMQENADTAMPVDPCDKDFRVPRVEVKNRNKTKVAGDPTVEVKHRNKTKVAGASTVEVKNRNKTKVASDQNEATPVQQDSIKSKRLRSSQPERVKFSQDLNVPAQPVEISLRGRPVLPSLQLHNLVDMWSETVPKSEKMRSFVGSSAKDFVMVLSYGRKA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1555 439 CDD RING-HC_PCGF 18 60 - -
Dere03g1555 439 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Dere03g1555 439 MobiDBLite consensus disorder prediction 113 131 - -
Dere03g1555 439 FunFam Polycomb group RING finger protein 3 4 108 - -
Dere03g1555 439 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 438 IPR044807 GO:0004842
Dere03g1555 439 SMART ring_2 20 60 IPR001841 -
Dere03g1555 439 SUPERFAMILY RING/U-box 14 85 - -
Dere03g1555 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 115 IPR013083 -
Dere03g1555 439 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Dere03g1555 439 MobiDBLite consensus disorder prediction 137 164 - -
Dere03g1555 439 MobiDBLite consensus disorder prediction 85 164 - -
Dere03g1555 439 MobiDBLite consensus disorder prediction 192 213 - -
Dere03g1555 439 MobiDBLite consensus disorder prediction 340 363 - -
Dere03g1555 439 MobiDBLite consensus disorder prediction 340 370 - -
Dere03g1555 439 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1555 Dere-ChrDere03 25937787 25942774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1555 1 270 C3H Transcription Factor Family AT2G30580 37.407 3.55e-48 166