Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1552 ATGGTCATTGCTTCCTTTGCTCTTTCCTTAAAACCAACGCTTCAGATTGTGCTGCCACAACCCCCCAAAACGCATCTTGACCGTACCCCACTACCCCCCCCCTCTCTGTCCCTTCTTGCCTTGCTCCTGTTCCCTTTCCTGCCCACACCTTCACCCTCCCGTTCTCACTCATTTCTGCATTTCTCACTACCAAAGACGTGTAGGCCCATCCCTAAGCTTTGGATCCTATGTACAAGTATTCTGAAAATGGAAAACATTATGGAATATGAGAATGATCTCAATCTAAAAGCCACAGAACTGAGACTGGGGTTGCCAGGAACAGAGGAAAGTGTTAGAAACAACAAAAACAAAAGGCTGTTGCCTGCAACATCTGAAGAGTCTGCATCAAATGAATCTAATGCTCCTATTGTGGATAGTGATGCAGCTTCACCTTACAAGGCAAAGATAGTGGGGTGGCCACCAATACGGTCATACAGGAAAAACAGCTTGAAGGAGGCAGAAAGTGGTGGGAATGGGATCTATGTGAAAGTAAGCATGGATGGAGCCCCTTACCTCAGAAAGATTGACTTGAAGTTTTACAGAGGCTACCCAGAACTTCTCAATGCCCTTGAAAACATGTTCAAGTTAGCCATAGGTAAGTACTGTGAAAGAGAGGGTTACAAGGAATCAGATTATGCACCTACATATGAAGACAAGGATGGTGATTGGATGCTTGTAGGAGATGTTCCATGGGATATGTTTATGACTTCCTGCAAAAGGCTGAGGATCATGAAAGCAGCAGAAGTTAAGGGTTTAGGTTGTGGTGTATGA 810 0.4481 MVIASFALSLKPTLQIVLPQPPKTHLDRTPLPPPSLSLLALLLFPFLPTPSPSRSHSFLHFSLPKTCRPIPKLWILCTSILKMENIMEYENDLNLKATELRLGLPGTEESVRNNKNKRLLPATSEESASNESNAPIVDSDAASPYKAKIVGWPPIRSYRKNSLKEAESGGNGIYVKVSMDGAPYLRKIDLKFYRGYPELLNALENMFKLAIGKYCEREGYKESDYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRIMKAAEVKGLGCGV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1552 269 Gene3D - 167 269 - -
Dere03g1552 269 MobiDBLite consensus disorder prediction 108 137 - -
Dere03g1552 269 Pfam AUX/IAA family 127 266 IPR033389 -
Dere03g1552 269 MobiDBLite consensus disorder prediction 116 137 - -
Dere03g1552 269 ProSiteProfiles PB1 domain profile. 172 259 IPR000270 GO:0005515
Dere03g1552 269 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 92 262 IPR003311 GO:0005634|GO:0006355
Dere03g1552 269 SUPERFAMILY CAD & PB1 domains 169 258 - -
Dere03g1552 269 FunFam Auxin-responsive protein 167 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1552 Dere-ChrDere03 25875217 25876926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1552 175 265 B3 DNA Binding Superfamily AT2G46530 38.462 3.68e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere03g1552 AUX_IAA 3.6e-50 CL0072