Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1550 ATGGAAACAGGGGCGGCGCCACCCATCCCTCCGCCGGAACTTTCCGGCACTACTATTCTCGGAAAGTACGAGTTGTCTCATCTTCTCGGTCGCGGTAGCTTTGCTAAGGTCTACAAAGCGCGATCCTTGGTCGACGGCTCCACCGTCGCCGTGAAAATCATCGACAAACTTAAAACCGTTAAACCGTCCATGGAATCTAGAATCGTCCGCGAAGTCCAAGCAATGAGCCGCCTCCACCACCACCCAAATATCATCAAAATCTACGAAGTTCTGGCAACGAAGACCAAGATCTACCTGATCATCGAGTTCGCAGCCGGCGGCGAACTCTGTTCCAAAATCGAGCGCAAGGGCCGGTTGACGGAACGGTCAGCGCGCAGTTACTTCCAGCAATTAGTCTCCGCTCTCTGTTTCTGTCACCAAAACGGCGTTGCTCACCGTGACATCAAGCCTCAGAACCTCCTGTTAGATAAGGACGGCAATTTGAAGGCCTCGGATTTCGGTCTGTCCGCTTTGCCCGAAAATCTCAAAAACGGGTTGCTCCGCACGGCTTGTGGTACTCCGGCTTACATCGCGCCCGAGATACTCGGACGGTGCAACTACGACGGCTCCAAAGCCGATGCATGGTCGTGTGGCATCATACTATACGTGATGCTCGCTGGGCGTCTACCATTCGACGATTCCAACATCCCGACGATGTTCAGGAAGACTAGATCGCGCGATTATCAGTTCCCAGAGTGGATTTCGCGGCCAGCGCGCCACGTGATCGACCAACTACTTGACCCGAACCCGCGTACGAGGATGAGCCTGCAAGCTCTGTTTGAGAACTCGTGGTTCAAGAAATCGCTGAAACCTGAACTGGAAATGAGCGTATTCGGATGGGGACCGGATTCGTGCGCAAAATCTGATGCGGGGTTCAATGCTTTTGATATAATATCAATGTCTTCGGGTTTGGACTTGAGGGGGCTGTTTGAAACGACGTCGGGGAAGAGGAAGGAGAAGAGGTTCACATCGAATGCGAAACTGAATGTGGTGGTGGAGAGAGTGAAGGACATTGGAGGGGGTTTAGGGTTTAAGGTTGAAACAGGTAAGAATGGGTCAATTGGTATGTGGAAAGGGAAGGTGGCTACGGTGGTTGAGGTGAATGAGATCGTGAGAGAGTTGTTGTTGGTGACTGTGAAAGTGGTGGAAGGTGGGTTAGATTTTGAGGAGCTTTATTGGAAGGACTTGAAAGCTGGACTTGATGACATTGTTCTTTCTTGGCATAACGATGCACTGTGA 1278 0.5156 METGAAPPIPPPELSGTTILGKYELSHLLGRGSFAKVYKARSLVDGSTVAVKIIDKLKTVKPSMESRIVREVQAMSRLHHHPNIIKIYEVLATKTKIYLIIEFAAGGELCSKIERKGRLTERSARSYFQQLVSALCFCHQNGVAHRDIKPQNLLLDKDGNLKASDFGLSALPENLKNGLLRTACGTPAYIAPEILGRCNYDGSKADAWSCGIILYVMLAGRLPFDDSNIPTMFRKTRSRDYQFPEWISRPARHVIDQLLDPNPRTRMSLQALFENSWFKKSLKPELEMSVFGWGPDSCAKSDAGFNAFDIISMSSGLDLRGLFETTSGKRKEKRFTSNAKLNVVVERVKDIGGGLGFKVETGKNGSIGMWKGKVATVVEVNEIVRELLLVTVKVVEGGLDFEELYWKDLKAGLDDIVLSWHNDAL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1550 425 CDD CIPK_C 306 414 - -
Dere03g1550 425 Pfam Protein kinase domain 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1550 425 FunFam Maternal embryonic leucine zipper kinase 16 290 - -
Dere03g1550 425 FunFam Aurora kinase A 16 107 - -
Dere03g1550 425 Gene3D Kinase associated domain 1, KA1 302 418 - -
Dere03g1550 425 SUPERFAMILY Protein kinase-like (PK-like) 19 295 IPR011009 -
Dere03g1550 425 Pfam NAF domain 305 360 IPR004041 GO:0007165
Dere03g1550 425 CDD STKc_AMPK-like 22 277 - -
Dere03g1550 425 Gene3D Transferase(Phosphotransferase) domain 1 15 299 - -
Dere03g1550 425 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Dere03g1550 425 ProSiteProfiles Protein kinase domain profile. 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1550 425 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Dere03g1550 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Dere03g1550 425 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 18 385 - -
Dere03g1550 425 SMART serkin_6 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1550 Dere-ChrDere03 25854195 25855472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1550 8 422 CBL-interacting serine-threonine protein kinases AT4G14580 57.920 3.29e-162 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Dere03g1550 Pkinase 8.7e-71 CL0016