Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1544 ATGTCTGCGTGTTTCAGTGGAGCTGGTGGAAGAACCTACGGGTTCGATTTCGATTTTGTCAAATCTCCTTCTACATCGAGCCGAACTTCGCATACATCTTCTCCTTCTTCAACTATCTCCGAATCGAGCGACTCTCCACTTGCTATCTCCACCAGAAAACCTCGAACCCCTCGAAAGCGACCCAACCAAACTTACAATGAAGCTGCTGCAATGCTTTCCAATGCATACCCAAATCTCTTCCCCACCAAAAGCTTTAAAAATCCTTGCAAATTCACAAAACCAACCAATAATTCTTGGAATGAATCTTCAGAATTGCTGTTTCCTTTTCAAGTATTTGACAGCTCCTCTTTCCTACTCCAACACCAACCAATCCAACACAAGCCCAGTAATTTCCCAATGGAGCCCAAAGCAGTTAATCTACCAGAAAAACTGTGCCAGAGTCCTGGGGAGATTAGCTCGCGAGTGATGACTCAGGAAGTCGACGATGATTGCCACGAAGATTTTGACGCTGAATCGATTCTAGATGAGGAAATCGGAGAGGGTATCGATAGCATCATGGGAAGCAGGGCCGAAGATTCCCACGGCGCGTCTTGTCACAGCGAAGACGTGAATCCTTGGACTGTGGATTCGACGGGGTTTGGTTTTGGCGGGAAATTCGATTCCGGGCTAGTAGCTCTCCGGCGAGTCGATGAAGGAAATAATTGGTGGAATATTCCTGCTGTAGTTGATATACTTCAAATCACACCGGAAATAAAAAAGCCTCCTCCTGCGGTGTCCGTTGCGCCGGAGAATAAGAAGAAGAAGAAGAAGAAGACAAAGAAGGTCGATAAACCGACGACCATCGAATTGAAGAACCCGGAATTGCCGAAGGAGAGCTCGATTCCAAAATCAAATCCTGGTTTGCTGTTGAAGTTGAATTACAACGGGGTTTTGAATGCTTGGTCTGACCGGGGTTCACCTTTCACCGGCGAAAGTCCCGCCTCCGATGTGCCAGGAAATGATGTTAGTGCGCGGCTGGCGCAGATAGATTTGTTCTCAGACAGTGGGGGAGTGATGAGAGAAGCTAGCGTGTTACGCTACAAGGAAAAGAGGCGAACCCGCCTCTTCTCCAAGAAGATCAGATACCAGGTCAGAAAGGTCAACGCAGATCGACGGCCCAGAATGAAGGGGCGATTTGCTAGGAGGGCCAATTGTTGCTCAAACGCACTGATATCATAA 1218 0.477 MSACFSGAGGRTYGFDFDFVKSPSTSSRTSHTSSPSSTISESSDSPLAISTRKPRTPRKRPNQTYNEAAAMLSNAYPNLFPTKSFKNPCKFTKPTNNSWNESSELLFPFQVFDSSSFLLQHQPIQHKPSNFPMEPKAVNLPEKLCQSPGEISSRVMTQEVDDDCHEDFDAESILDEEIGEGIDSIMGSRAEDSHGASCHSEDVNPWTVDSTGFGFGGKFDSGLVALRRVDEGNNWWNIPAVVDILQITPEIKKPPPAVSVAPENKKKKKKKTKKVDKPTTIELKNPELPKESSIPKSNPGLLLKLNYNGVLNAWSDRGSPFTGESPASDVPGNDVSARLAQIDLFSDSGGVMREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFARRANCCSNALIS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1544 405 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 398 - -
Dere03g1544 405 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Dere03g1544 405 MobiDBLite consensus disorder prediction 22 62 - -
Dere03g1544 405 MobiDBLite consensus disorder prediction 253 295 - -
Dere03g1544 405 Pfam CCT motif 353 395 IPR010402 GO:0005515
Dere03g1544 405 MobiDBLite consensus disorder prediction 22 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1544 Dere-ChrDere03 25706951 25710202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1544 301 397 C2C2-CO-like Transcription Factor Family AT1G73870 47.788 2.31e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere03g1544 CCT 1.2e-16 CL0281