Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere03g1542 | ATGACGGACCAGACCGAGTTCAGTGTTCTATGCAGCCTCTTCACGTGGACTCAGAGAAGCAAGTCGTCAGCCAAGAAGCGCTCCAAGTTCCGCAAATTCCTCGATAACTTCTGTAAAGACAAAAATTATTTCAGCGCAATTCGGTTGATTCTTCCGAATCTCGACCGAGAGCGAGGCTCCTATGGACTCAAGGAGTCGGTTCTTGCCATCTCCCTCATTGACGCTCTTGGGATGTCTAGGGAATCCGAGGACGCTCTACGACTCATTAATTGGCGCAAAGGTGGTGCAAGCACTGGTGCCAATGCCGGAAATTTTGCTCTTGTCGCTGCTGAGGTGCTGCAGCGTAGACAAGGGTTGGCATCTGGTAGATTAACAATAAGGGAGTTAAATGACTTGCTTGACAGACTAGCTTCAAGCGAAAACAGGGCTGAGAAGACTTCAGTACTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTCAAAGATCTAAAGCTTGGAATTAGTGAAAAAAGCATTTTCCATGAATTCCATCCAGATGCTGAAGACTTGTTCAATGTAACTTGTGACTTAAAATTAGTTTGTGAAAAGCTAAAGGATCGGAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCTCAACTAGCTAAGAGAGTTGCTGATGCAACTGAAGCATGGAAAAAGCTTCATGGAAAGGAAGTTGTTGTGGAGTGCAAATTTGATGGTGATCGAATCCAAATTCATAAAAATGGAACAGATATACATTTCTTCTCAAGGAACTTTCTCGACCATTCAGAATATCAACATGCGATGTCAGGCATCATAGAGCAAAATATTCTTGTCAACAGGTGTATTCTTGACGGTGAAATGTTGGTTTGGGATAAATCCTTGAACCGTTTTGCTGAATTTGGTTCAAATCAGGAAATAGCTAAGGCAGCAAGGGACGGGCTTGATAGTGATAGACAGTGGCCAGATGTTGCATTTGATATCCTTTATGTTGGAGATACAAGTGTAATTCACCAAAGCTTGAAGGAAAGACATGAGCTTCTCCGTAAAGTTGTGAGACCCTTAAAGGGAAGTTTGGAAATTTTAATACCTAATGGTGGTCTCAATGCTAATCGTCCCCCTGGGGAACCTTGTTGGTCATTTATTGCCCGTGATGTGGATGCAGTTGAGAGTTTTTTCAAAGAAACCATAGAGAATAGAGATGAGGGAATTGTTTTGAAAGACCTCGGTTCCAAATGGGAACCGAGCGACCGTAGTGGAAAGTGGATGAAATTGAAGCCTGAATACATTAAAGCTGGTGCTGATCTGGATGCACTTATTATAGGTGGCTATTATGGCTCTGGACGAAGAGGAGGGGAGGTTGCTCAATTCCTGGTGGGCCTTGCCGAGCGTCCCTCCCCAAATGCATATCCCAAGCGATTTATCTCCTTTTGTAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCTGTAGTAACCAAACTGGAACCGTATTTCAGGAAGTATGAATACCCAAAGAAGAGGCCGCCAAGTTTTTATCAAGTTACCAATCATTCAAAAGAACGACCTGATGTGTGGATTGATAGCCCTGACAAATCAATAATTCTCTCTATAACCAGTGATATTCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGTCTCAGATTTCCTCGAATCGACAGGGTGAGATATGACAAGCCCTGGTATGAATGTCTCGATGTGGAATCATTTATAGAACTAGTGCATTCCAGCAATGGCACCACAACAGGGGGTGCAGAATATGGCGGCAAGCAGGATGGTAAATCAAAACGCATGAAATCCTCTAAAAGTGGAGAAAAGAAAAACATGTCCATTGTTCCTTCTCATTTAATTCAGACTGATGTTTCCAATGTTAAAGGGGGCTCATTAATATTCTCAAATATGATGTTTTATTTCGTTAATGTGCCTCCATCCCATTCTCTGGAATCCTTGCATAAGATGGTTGCTGAGAATGGGGGAACTTTCTCAATGAATTTGAATAATTCAGTCACCCATTGTGTTGCAGCAGATAGCAAGGGTTTTAAATTTGAAGCAGCCAAACGTCGTGTTGATATCATCCATTATAGTTGGGTATTAGATTGCTGTAAGCAAAAGAAGCTTGTGCACTTACAGCCAAAGTACTTTCTCTTCCTTTCTGAACTCACAAAGAAGAAGTTACATGAAGAAATTGATGAGTTCTCAGACTCTTACTACTTGAATCTAGATTGTGCAGACATCAAGCAGCTCTTAAGCAATATTCGCAGATCAAAAGATGTCAGCACTACTGACTATTACAGGAAAAAATACTGCCCGAAGGATAAGTGGTCTCACTTTCATGGATGCTCTATTTATTTCCACACTTACATACCACCTTTGAAAGGAGATTGGGAAGTTCTGTTGGGACTTTCTCTGAGGAGGTTGCAGTGTGAAGTTCTCGTGAGTGGTGGCAAAGTTACCAATAGTCCCACATGTGCTACCCATTTTGTGGCCTTGTCGGTGGCAGGATATAATATAGACTTTAAAGAAATGCTACGAAGTTTCACTTCAGTAAGAGGAAAACTTCTTTCAAGTAAGAGGTTGCATGTTGTTGGATCCCAGTGGCTCGAAGATTGTTTAGAACATGGCCAAAGATTACCAGAAGAAACATATACATTGAAGCCCAGCGGCATAGAAGAATTAACTGCTGAAGAGTGCAAACAGGACTTGGCTCTAGAGGGTCATTTTAGTGGGGATAATGTAGAGGACCAAAATTTGTCACTTGTCTCTGAAAAGGGAAGTAAGCAGAGAAGTGCAGAAGCTGTGGTTTCTCTTGAGAAAGGTGGCAAAAGGGAACAAGGAAGACCTGCAGGCGGAGGCAGAAAAAAATTTAGAACAGCTGGCAACCAAACTCAAAGACCACAAGCACGTTTAGGAAGAAGGCCTGCTAAAATATGTGAATATGAATCAGATGAAAGTGGTTCTTGTGATGAAAAACCATTTGAAGATGAGATTGACACAGGAGAAGTCAGTCTTGACTCTGGCAAGAAACCTCTAGATACCCAAGAGATGGGTAAAAGCGCGGAAGTCCCTGAGAATGAAATATTATCGAGTTCTGAACCATCAAAAAGTGACCATGCAGGAAAGCAAGAGGTTTTGAAGGACAATGGATGTGAAAAACAGTCTGTACCCGAAATTGAAATGAGTGAACAGCATAATGACCAAAACAGTAAGGCTGAGAAACTTGAAATTATGGCTGATCCAATACAGGCGATGCTTTTTGACATGATTCCTAGCCTTGTGACGAAGAAAGTCGATGAAACTATGAATTATAATGTTGAAGATGAGAAGCCACCCCAACAATCCAATGCAGAGCCTACAAAGAAAAGGAAAGTCAGCTACAAGGATGTTGCTGGTGAGCTGCTCAAGGATTGGTAG | 3486 | 0.4197 | MTDQTEFSVLCSLFTWTQRSKSSAKKRSKFRKFLDNFCKDKNYFSAIRLILPNLDRERGSYGLKESVLAISLIDALGMSRESEDALRLINWRKGGASTGANAGNFALVAAEVLQRRQGLASGRLTIRELNDLLDRLASSENRAEKTSVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAKRVADATEAWKKLHGKEVVVECKFDGDRIQIHKNGTDIHFFSRNFLDHSEYQHAMSGIIEQNILVNRCILDGEMLVWDKSLNRFAEFGSNQEIAKAARDGLDSDRQWPDVAFDILYVGDTSVIHQSLKERHELLRKVVRPLKGSLEILIPNGGLNANRPPGEPCWSFIARDVDAVESFFKETIENRDEGIVLKDLGSKWEPSDRSGKWMKLKPEYIKAGADLDALIIGGYYGSGRRGGEVAQFLVGLAERPSPNAYPKRFISFCRVGTGLSDDELDAVVTKLEPYFRKYEYPKKRPPSFYQVTNHSKERPDVWIDSPDKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKPWYECLDVESFIELVHSSNGTTTGGAEYGGKQDGKSKRMKSSKSGEKKNMSIVPSHLIQTDVSNVKGGSLIFSNMMFYFVNVPPSHSLESLHKMVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRRVDIIHYSWVLDCCKQKKLVHLQPKYFLFLSELTKKKLHEEIDEFSDSYYLNLDCADIKQLLSNIRRSKDVSTTDYYRKKYCPKDKWSHFHGCSIYFHTYIPPLKGDWEVLLGLSLRRLQCEVLVSGGKVTNSPTCATHFVALSVAGYNIDFKEMLRSFTSVRGKLLSSKRLHVVGSQWLEDCLEHGQRLPEETYTLKPSGIEELTAEECKQDLALEGHFSGDNVEDQNLSLVSEKGSKQRSAEAVVSLEKGGKREQGRPAGGGRKKFRTAGNQTQRPQARLGRRPAKICEYESDESGSCDEKPFEDEIDTGEVSLDSGKKPLDTQEMGKSAEVPENEILSSSEPSKSDHAGKQEVLKDNGCEKQSVPEIEMSEQHNDQNSKAEKLEIMADPIQAMLFDMIPSLVTKKVDETMNYNVEDEKPPQQSNAEPTKKRKVSYKDVAGELLKDW | 1161 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere03g1542 | 1161 | MobiDBLite | consensus disorder prediction | 996 | 1011 | - | - | |
| Dere03g1542 | 1161 | CDD | Adenylation_DNA_ligase_IV | 214 | 446 | IPR044125 | GO:0005524 | |
| Dere03g1542 | 1161 | SUPERFAMILY | Nucleic acid-binding proteins | 450 | 600 | IPR012340 | - | |
| Dere03g1542 | 1161 | SUPERFAMILY | BRCT domain | 655 | 740 | IPR036420 | - | |
| Dere03g1542 | 1161 | Gene3D | DNA ligase/mRNA capping enzyme | 220 | 443 | - | - | |
| Dere03g1542 | 1161 | CDD | BRCT_DNA_ligase_IV_rpt1 | 655 | 741 | - | - | |
| Dere03g1542 | 1161 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 340 | 478 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
| Dere03g1542 | 1161 | MobiDBLite | consensus disorder prediction | 944 | 1098 | - | - | |
| Dere03g1542 | 1161 | SUPERFAMILY | BRCT domain | 789 | 911 | IPR036420 | - | |
| Dere03g1542 | 1161 | CDD | OBF_DNA_ligase_IV | 448 | 592 | - | - | |
| Dere03g1542 | 1161 | Gene3D | - | 444 | 605 | IPR012340 | - | |
| Dere03g1542 | 1161 | Pfam | BRCT domain, a BRCA1 C-terminus domain | 653 | 736 | IPR001357 | - | |
| Dere03g1542 | 1161 | ProSiteProfiles | BRCT domain profile. | 651 | 739 | IPR001357 | - | |
| Dere03g1542 | 1161 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 417 | 441 | IPR016059 | GO:0003909 | |
| Dere03g1542 | 1161 | FunFam | DNA ligase | 666 | 780 | - | - | |
| Dere03g1542 | 1161 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 250 | 258 | IPR016059 | GO:0003909 | |
| Dere03g1542 | 1161 | Gene3D | BRCT domain | 665 | 779 | IPR036420 | - | |
| Dere03g1542 | 1161 | Gene3D | BRCT domain | 798 | 909 | IPR036420 | - | |
| Dere03g1542 | 1161 | FunFam | DNA ligase | 444 | 605 | - | - | |
| Dere03g1542 | 1161 | MobiDBLite | consensus disorder prediction | 960 | 975 | - | - | |
| Dere03g1542 | 1161 | SMART | BRCT_7 | 653 | 729 | IPR001357 | - | |
| Dere03g1542 | 1161 | SMART | BRCT_7 | 813 | 899 | IPR001357 | - | |
| Dere03g1542 | 1161 | Pfam | DNA ligase N terminus | 6 | 186 | IPR012308 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
| Dere03g1542 | 1161 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 6 | 207 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
| Dere03g1542 | 1161 | MobiDBLite | consensus disorder prediction | 615 | 629 | - | - | |
| Dere03g1542 | 1161 | Pfam | ATP dependent DNA ligase C terminal region | 465 | 584 | IPR012309 | GO:0003910|GO:0006281|GO:0006310 | |
| Dere03g1542 | 1161 | MobiDBLite | consensus disorder prediction | 606 | 632 | - | - | |
| Dere03g1542 | 1161 | NCBIfam | ATP-dependent DNA ligase | 61 | 599 | IPR000977 | GO:0003910|GO:0005524|GO:0071897 | |
| Dere03g1542 | 1161 | Gene3D | - | 1 | 218 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
| Dere03g1542 | 1161 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 185 | 442 | - | - | |
| Dere03g1542 | 1161 | Coils | Coil | 126 | 146 | - | - | |
| Dere03g1542 | 1161 | PANTHER | DNA LIGASE 4 | 3 | 1154 | IPR029710 | GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103 | |
| Dere03g1542 | 1161 | Pfam | ATP dependent DNA ligase domain | 226 | 441 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
| Dere03g1542 | 1161 | ProSiteProfiles | BRCT domain profile. | 802 | 909 | IPR001357 | - | |
| Dere03g1542 | 1161 | MobiDBLite | consensus disorder prediction | 1127 | 1149 | - | - | |
| Dere03g1542 | 1161 | MobiDBLite | consensus disorder prediction | 1060 | 1097 | - | - | |
| Dere03g1542 | 1161 | FunFam | DNA ligase | 1 | 218 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere03g1542 | 214 | 601 | Core DNA Replication Machinery Family | AT1G08130 | 26.914 | 2.43e-26 | 114 |