Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1540 ATGGAGAACATTGGTGAAGAGTACAGGCATTACTGGGAGACCAACATGTTCTTTCAAACCGAAGAGCTCGACAGCTGGGGATTGGACGAGGCCTTCTCCGGTTACTACGACTCGAGCTCGCCCGACGGCGCTGCGTCATCGGCGGCGTCGAAGAACATTGTCTCCGAGAGGAACCGGAGGAAGAAGCTCAACGAAAGGCTTTTTGCTCTTAGAGCTGTGGTTCCCAACATAAGCAAGATGGACAAGGCTTCGATAATTAAGGATGCTATAGATTACATCCAACACTTGCACGAGCAGGAGAAGAGTATCGAAGCAGAGATAACGGAGCTCGAATCTGGGAAGCAGATGATGAAAAGCTCGAGCAATACTGATTTTGAACAAGACCTCCCTGTTCTGCTTAGGTCCAAGAAGAAAAAAACAGAACAGCAGCAGCAGCTTTACGATTCTGTCATCACTTCAAGAAATTCCCCGATTGAAGTCCTTGAGCTCAGGGTAACATACATGGGAGAGAAGACAGCTGTGGTGAGTTTGACATGTAGTAAAAGGACGAACACAATGGTGAAACTGTGCGAAGTGTTCGAATCTCTGAAGCTCAAAATTATAACAGCCAATATAACTTGTGTATCAGGCAGGCTCTTGAAGACAGTCTTCGTCGAGGCAGATGAAGAAGAGAAAGACCTCTTGGAGATAAAAATCCAAACAGCCATTAAAGCTCTTAATGGTCCTCAAAGCCCTATGAGTATCTGA 747 0.4618 MENIGEEYRHYWETNMFFQTEELDSWGLDEAFSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIDYIQHLHEQEKSIEAEITELESGKQMMKSSSNTDFEQDLPVLLRSKKKKTEQQQQLYDSVITSRNSPIEVLELRVTYMGEKTAVVSLTCSKRTNTMVKLCEVFESLKLKIITANITCVSGRLLKTVFVEADEEEKDLLEIKIQTAIKALNGPQSPMSI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1540 248 SMART finulus 53 102 IPR011598 GO:0046983
Dere03g1540 248 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Dere03g1540 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Dere03g1540 248 Coils Coil 218 238 - -
Dere03g1540 248 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 233 - -
Dere03g1540 248 Gene3D - 44 113 IPR036638 GO:0046983
Dere03g1540 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
Dere03g1540 248 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1540 Dere-ChrDere03 25590603 25594590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1540 1 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 64.414 1.40e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g1540 HLH 4.9e-12 No_clan