Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1534 ATGAGCTTCTTGAAGAATTCACCTCGCCGCCAGAGTGACATAGAGGCCGGAAGTAGCAGCTTCGGTGATTGTGAAGATGGAGAGAGTTCGTCTAGTCCATTTGGTATTACCAGAACAAAGAATGCTCCTATTGAACGCCTTAAACGTTGGAGGCGAGCTGCACTGGTGCTTAATGCTTCTCGTCGATTTCGTTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGCGGCAAATATTGAGGAAGATTAGGGGTCATGCACAAGCTATTAGAGCTGCATATCGTTTCAAAGAAGCTGGAAGGCTTGTCAATGGAACCATACCACCTTCTCCAACCACTGTTGGCGACTTTGCTATTGGAAATGAACAACTTATTTCAATTTCAAGGGATCATAATATTGATGCTCTGCAGCAATATGGAGGGGCTAGAGGGCTATCAGATTTGTTGAAAACCAATATAGAGAAGGGGATTCATGGTGATGATTCTGATTTATTAAAACGGAGGAATGCATTTGGATCAAACAATTATCCTCGGAAGAAAGGAAGGAGTTTTTTGCTGTTTATGTGGGATGCTTGCAAGGATCTTACTTTGGTTATATTAATGGTAGCTGCAGCAGCTTCATTAGCACTGGGAATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCCTTTGCAGTAATCCTTGTTATCGTTGTTACTGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGATCTAAATGAGGAGAAGAGAAATATACATTTAGAGGTTATCAGAGGTGGCAAAAGAGTTGAGATCTCGATATATGATATTGTTGTTGGTGATGTTGTACCCCTTAATATTGGTAACCAGGTTCCTGCCGATGGAATATTGATTACTGGTCACTCTCTTGCTATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTCTATAAGGATTACAGGGACCCTTTTCTGATGTCTGGATGTAAAGTTGCTGATGGTAGTGGCACTATGCTGGTTCTTGGTGTTGGTATAAATACTGAATGGGGGCTTCTGATGTCTAGTATTTCAGAAGACAATGGTGAAGAAACACCCTTGCAGGTACGTTTAAATGGTGTTGCCACTTTCATTGGTATTGTTGGACTCTCTGTTGCTGTTGTTGTTCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATACTAAAAACCCAAATGGAACTGTTCAATTTAAGGCAGGCAAGACAAAGGTTGGTGATGCCATTGATGGGGCAATTAAGATAGTCACAGTTGCGGTGACCATTGTAGTGGTTGCAGTGCCTGAAGGTCTCCCTCTAGCAGTTACCTTGACACTTGCCTACTCGATGAGAAAAATGATGGCAGACAAAGCTTTGGTGAGGAGGCTTTCAGCTTGTGAGACAATGGGCTCTGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGAGAGTAGTTGAGGCTTACAGTGGTGGGAAGAAGATTGATCCTCCTCACAACAAGGCAGAGCTCTCTCCTAATCTCTGCACTTTGATCATTGAAGGTGTTGCACAGAACACTAGTGGAAGTGTTTATATGGCTGAGGATAGTACTGATGTTGAGGTTTCTGGATCACCAACGGAAAAGGCAATTTTACATTGGGGAATTGAGCTTGGGATGAAATTTGAGGCTGTCAGATCAGAGTCATCAATTATTCATGTTTTTCCATTTAATTCAGAGAAAAAACGTGGGGGAGTTGCAGTACTAACGCCTGACTCTCAAGTGCATATACATTGGAAGGGTGCTGCTGAGATAGTCCTTGCCCATTGTACAGGGTATATTGATGCTAGTGGCCTGTTAGTGAAGATGGATGAAGAGAAGATGACATTTTTTCAAAATGCTATTGAAGATATGGCTGCTGATAGTCTACGTTGCGTTGCCATTGCATATAGATTATATGAAATGGAGAGTGTTCCGACTAGTGAAGAAGAACTTGCTCACTGGTCATTGCCAGAGGATGATCTCATTTTATTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAAGAAGCAGTTCAACTTTGCAAAAAAGCTGGAGTTAAGGTTAAGATGGTGACGGGGGACAATGTGAAAACTGCAAAATCTATTGCCATGGAATGTGGAATACTTGATTCATTTGCAGATGCCATAGAGCCAAAAATCATTGAGGGAAAAGCATTTCGTGCTATGTCAGATGCACAGAGAGATGACATTGCTGATGCAATTTTGGTTATGGGAAGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAAGGGCATGTTGTGGCCGTAACTGGAGATGGAACTAATGATGCTCCTGCACTACATGAGGCTGATATAGGTCTTGCGATGGGTATTCAAGGGACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTTCTTCAGTTGTGAAGGTTGTCAGATGGGGACGATCTGTATATGCGAATATACAGAAATTTATCCAGTTCCAACTTACAGTCAACGTTGCAGCTCTTGTTATTAATGTTGTTGCAGCAGTTTCCTCTGGTGATGTCCCGCTAAATGCTGTGCAGCTTCTCTGGGTAAATCTTATCATGGATACACTTGGAGCACTGGCCTTGGCAACTGAACCACCTACTGATCATTTGATGGATCGGCCTCCAGTAGGTCGAAGGGAACCTCTAATAACAAACTTTATGTGGAGGAATCTGCTTATACAGGCAATGTACCAAGTGTCTGTTTTGCTTGTACTGAATTTCCGAGGTAGGAGCTTACTGGGTCTGAAGCATTACTCCAATGACCACGCTATCAAAGTGAAGAACACCTTAATATTCAATACATTTGTTCTCTGTCAAATCTTCAATGAATTTAATGCGCGAAAGCCAGATCAATTCAACATATTCAAGGGAATCCAAAAAAACTACCTTTTTATGGGGATAGTGGGTTTAACTCTTGTACTTCAGATTATCATCATTCAATTCCTTGGGAAGTTCACTTCAACTGTGAAGCTTAATTGGAAGCAGTGGCTCATTTCGGTTGTCATTGGAATTATCAGCTGGCCTCTTGCGTTGGTCGGGAAATTGATACCTGTACCAAAGAGTAGCTGTCACCTGAAATTTTATAGGAGTCCTCTAGGAACTTCACTGGGGAAGACTTCTGAGCCTTCTTAA 3237 0.4192 MSFLKNSPRRQSDIEAGSSSFGDCEDGESSSSPFGITRTKNAPIERLKRWRRAALVLNASRRFRYTLDLKKEEEKRQILRKIRGHAQAIRAAYRFKEAGRLVNGTIPPSPTTVGDFAIGNEQLISISRDHNIDALQQYGGARGLSDLLKTNIEKGIHGDDSDLLKRRNAFGSNNYPRKKGRSFLLFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRGGKRVEISIYDIVVGDVVPLNIGNQVPADGILITGHSLAIDESSMTGESKIVYKDYRDPFLMSGCKVADGSGTMLVLGVGINTEWGLLMSSISEDNGEETPLQVRLNGVATFIGIVGLSVAVVVLIVLLARYFSGHTKNPNGTVQFKAGKTKVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMRVVEAYSGGKKIDPPHNKAELSPNLCTLIIEGVAQNTSGSVYMAEDSTDVEVSGSPTEKAILHWGIELGMKFEAVRSESSIIHVFPFNSEKKRGGVAVLTPDSQVHIHWKGAAEIVLAHCTGYIDASGLLVKMDEEKMTFFQNAIEDMAADSLRCVAIAYRLYEMESVPTSEEELAHWSLPEDDLILLAIVGLKDPCRPGVKEAVQLCKKAGVKVKMVTGDNVKTAKSIAMECGILDSFADAIEPKIIEGKAFRAMSDAQRDDIADAILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFSSVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRPPVGRREPLITNFMWRNLLIQAMYQVSVLLVLNFRGRSLLGLKHYSNDHAIKVKNTLIFNTFVLCQIFNEFNARKPDQFNIFKGIQKNYLFMGIVGLTLVLQIIIIQFLGKFTSTVKLNWKQWLISVVIGIISWPLALVGKLIPVPKSSCHLKFYRSPLGTSLGKTSEPS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1534 1078 Gene3D - 43 98 - -
Dere03g1534 1078 Pfam Cation transporter/ATPase, N-terminus 140 206 IPR004014 -
Dere03g1534 1078 SUPERFAMILY Calcium ATPase, transduction domain A 259 354 IPR008250 -
Dere03g1534 1078 Pfam Cation transporting ATPase, C-terminus 874 1051 IPR006068 -
Dere03g1534 1078 CDD P-type_ATPase_Ca_PMCA-like 163 922 - -
Dere03g1534 1078 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 1053 IPR023298 -
Dere03g1534 1078 PANTHER CATION TRANSPORTING ATPASE 91 1053 - -
Dere03g1534 1078 FunFam Calcium-transporting ATPase 9 plasma membrane-type 335 505 - -
Dere03g1534 1078 FunFam Calcium-transporting ATPase 42 98 - -
Dere03g1534 1078 FunFam Calcium-transporting ATPase 236 357 - -
Dere03g1534 1078 ProSitePatterns E1-E2 ATPases phosphorylation site. 483 489 IPR018303 -
Dere03g1534 1078 NCBIfam calcium-translocating P-type ATPase, PMCA-type 131 1053 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Dere03g1534 1078 FunFam Calcium-transporting ATPase 682 834 - -
Dere03g1534 1078 FunFam Calcium-transporting ATPase 491 689 - -
Dere03g1534 1078 Gene3D - 189 1042 - -
Dere03g1534 1078 Pfam haloacid dehalogenase-like hydrolase 478 803 - -
Dere03g1534 1078 FunFam Calcium-transporting ATPase 806 1055 - -
Dere03g1534 1078 SFLD Haloacid Dehalogenase 463 841 - -
Dere03g1534 1078 MobiDBLite consensus disorder prediction 1 37 - -
Dere03g1534 1078 SUPERFAMILY HAD-like 479 894 IPR036412 -
Dere03g1534 1078 Pfam Ca2+-ATPase N terminal autoinhibitory domain 32 74 IPR024750 GO:0005516
Dere03g1534 1078 Gene3D - 162 357 - -
Dere03g1534 1078 FunFam Calcium-transporting ATPase 189 246 - -
Dere03g1534 1078 SFLD p-type atpase 463 841 IPR044492 -
Dere03g1534 1078 SMART Cation_ATPase_N_a_2 140 211 IPR004014 -
Dere03g1534 1078 Pfam E1-E2 ATPase 259 459 - -
Dere03g1534 1078 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 488 686 IPR023299 GO:0000166
Dere03g1534 1078 NCBIfam HAD-IC family P-type ATPase 422 504 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere03g1534 1078 NCBIfam HAD-IC family P-type ATPase 757 869 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere03g1534 1078 PRINTS P-type cation-transporting ATPase superfamily signature 704 714 - -
Dere03g1534 1078 PRINTS P-type cation-transporting ATPase superfamily signature 481 495 - -
Dere03g1534 1078 PRINTS P-type cation-transporting ATPase superfamily signature 682 693 - -
Dere03g1534 1078 PRINTS P-type cation-transporting ATPase superfamily signature 813 825 - -
Dere03g1534 1078 PRINTS P-type cation-transporting ATPase superfamily signature 789 808 - -
Dere03g1534 1078 PRINTS P-type cation-transporting ATPase superfamily signature 305 319 - -
Dere03g1534 1078 PRINTS Sodium/potassium-transporting ATPase signature 224 244 - -
Dere03g1534 1078 PRINTS Sodium/potassium-transporting ATPase signature 600 618 - -
Dere03g1534 1078 PRINTS Sodium/potassium-transporting ATPase signature 474 495 - -
Dere03g1534 1078 Gene3D - 478 834 IPR023214 -
Dere03g1534 1078 Gene3D - 491 689 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1534 Dere-ChrDere03 25334661 25357799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1534 2 1063 Primary Pumps ATPases AT5G57110 74.160 0.0 1599