Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1522 ATGCTTGAATTTGCTAGAGAAAAAGTAATACAGTATATGGCAATTGCAGCTGCAACATCGACCATTACCATGAGGCTCAGCCATAGCCATGGCCACGACGACGCCACCACCAACAACGAGAATAGTTACGACAAGAACAAGCAAGCAGGTAACGAGGACGATGAAGATGGTCACGAGCAGGACATCGTGATGCCTGGATTTCGGTTCCACCCAACTGAAGAAGAACTGGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCCTTTCAATGTTGAGCTCATCACTTTTCTGGATCTCTATCGATATGACCCATGGGAACTTCCTGGTTTGGCAGCAATCGGCGAGAAGGAATGGTACTTCTATGTGCCGAGAGATAGGAAGTATCGGAACGGTGATCGTCCGAACCGAGTGACTACTTCTGGGTATTGGAAGGCAACTGGGGCTGACAGAATGATCCGAACAGACAGCTACAGATCCATTGGCCTCAAGAAAACCCTAGTCTTCTACTCTGGCAAAGCCCCTAAAGGTATTCGTACCAGTTGGATTATGAACGAGTATCGCTTGCCACACCACGAAACCGAACGATTTCAGAAGGCTGAGATATCTCTTTGCCGAGTGTACAAGAGAGCTGGCGTAGAAGACCATCCCTCTCTCCCTCGTTGTCTCCCAACTTCATCGAGAACTTCGCATAATTCTCACAAGAATAAGGACAACGTTAACCAAATGGTTCATCAGAACATGAGAGTTCTAGGACAACAATCACAGCATCAATATCAAACGGACCAAATAGTTGATAAAATGAATGAAACTGAGGGAAGCTGTACGACCCATGCCAACAATTACAGTGTAGGACTATCAGTTGGAGTGCAGGACGAAGAGCTAATGCTCATGCAGCAACCAAAGCAAGCCCAACCACAAGCAGAAGCAGCCTCCTCCTTCTTCCCCACAGGCTCTACTAATTCTTCTTCGTTACCATCTGATATTAGTAATGCAATAATGGTAGATGAACATCTCAATAGGCTAGCGAGTTATAATCAACAGTTACAGTACTACAATAATATTAATGCTCCTCCTCCTCCTCCTCAAAGTCATCAGTATCCTCCATACCTGCAGTTCTCTAATCTTCTATTGCAGCCACAACAACCAATGGTGGCTCTTAATTCGCTTCCAAACCCCTTCTCTGACAGATCATGGGAGTGGAATCCAATCCCTGAGGCAACAAACCGAGACTTCAGCAGCATGTCGACCTTCAAGTAA 1260 0.4619 MLEFAREKVIQYMAIAAATSTITMRLSHSHGHDDATTNNENSYDKNKQAGNEDDEDGHEQDIVMPGFRFHPTEEELVEFYLRRKVEGKPFNVELITFLDLYRYDPWELPGLAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTDSYRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETERFQKAEISLCRVYKRAGVEDHPSLPRCLPTSSRTSHNSHKNKDNVNQMVHQNMRVLGQQSQHQYQTDQIVDKMNETEGSCTTHANNYSVGLSVGVQDEELMLMQQPKQAQPQAEAASSFFPTGSTNSSSLPSDISNAIMVDEHLNRLASYNQQLQYYNNINAPPPPPQSHQYPPYLQFSNLLLQPQQPMVALNSLPNPFSDRSWEWNPIPEATNRDFSSMSTFK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1522 419 FunFam NAC domain-containing protein 35 72 213 - -
Dere03g1522 419 MobiDBLite consensus disorder prediction 27 59 - -
Dere03g1522 419 Gene3D NAC domain 72 213 IPR036093 GO:0003677|GO:0006355
Dere03g1522 419 MobiDBLite consensus disorder prediction 301 323 - -
Dere03g1522 419 MobiDBLite consensus disorder prediction 27 54 - -
Dere03g1522 419 SUPERFAMILY NAC domain 63 209 IPR036093 GO:0003677|GO:0006355
Dere03g1522 419 ProSiteProfiles NAC domain profile. 63 210 IPR003441 GO:0003677|GO:0006355
Dere03g1522 419 Pfam No apical meristem (NAM) protein 65 189 IPR003441 GO:0003677|GO:0006355
Dere03g1522 419 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 62 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1522 Dere-ChrDere03 25150952 25153057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1522 13 233 NAC Transcription Factor Family AT2G02450 73.303 8.88e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere03g1522 NAM 2.2e-34 No_clan