Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1519 ATGGAAGATGATATTGAAGTATGCAACACAGGGCTATGTCTTGGACTGGGGATAGGAGGGTATGTGCCAAAGAAGAAGAAACAGAAAGAGAACAAGCAAGTGGGTTGCTTCGACCTACCCTTTGAACTGTGTCCCAAAAGAGAAGAAACCCTTAAGAGTGTGGATCATGAGGAAGATGGATTATTCAGAGTAAAGAGACTGGATGAGGGACACCAATACGCCAACACCTTTAGAAAGAAACTGAGGCTCACAAAGGACCAGTCTGCGTTGCTTGAGGAAAGCTTCAAGCTGCATACCACTCTTAACCCCGCTCAGAAACAAGGACTTGCAGAGAAATTGAATCTGAAGCCTAGACAAGTCGAAGTTTGGTTTCAGAACAGAAGAGCGAGGACCAAGTTGAAGCAAACAGAGGTAGACTGCGAGTTCTTGAGGAAATGCTGCGAGAATCTAAAGGATGAGAATCGAAGATTGAAGAAGGAATTGCAGGAATTACGTGCACTAAAAGTTGAGCCATCGCCATTGTACATTCAACTCTCTAAGGCGGCGACGCTGGCAATGTGTTCGTCATGTGAGAAACCATTCAAAGCTAACGAAACAAAGAAGAAGAATAATACTAATACCATCAATAGCAACAGTAAATTGCAGAGCGTCGCTATAGAGTTTTAA 666 0.4339 MEDDIEVCNTGLCLGLGIGGYVPKKKKQKENKQVGCFDLPFELCPKREETLKSVDHEEDGLFRVKRLDEGHQYANTFRKKLRLTKDQSALLEESFKLHTTLNPAQKQGLAEKLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLRKCCENLKDENRRLKKELQELRALKVEPSPLYIQLSKAATLAMCSSCEKPFKANETKKKNNTNTINSNSKLQSVAIEF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1519 221 Coils Coil 133 170 - -
Dere03g1519 221 Gene3D - 84 130 - -
Dere03g1519 221 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Dere03g1519 221 SMART halz 134 177 IPR003106 GO:0006355|GO:0043565
Dere03g1519 221 CDD homeodomain 78 135 IPR001356 GO:0003677
Dere03g1519 221 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Dere03g1519 221 Pfam Homeodomain 78 132 IPR001356 GO:0003677
Dere03g1519 221 SUPERFAMILY Homeodomain-like 76 143 IPR009057 -
Dere03g1519 221 Pfam Homeobox associated leucine zipper 134 167 IPR003106 GO:0006355|GO:0043565
Dere03g1519 221 SMART HOX_1 76 138 IPR001356 GO:0003677
Dere03g1519 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1519 Dere-ChrDere03 25109903 25111014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1519 68 192 Homeobox Transcription Factor Family AT4G37790 70.400 2.48e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere03g1519 Homeodomain 3e-16 CL0123