Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1509 ATGGGGTCAGCTGGGGAATTAGTATTCCACACACTCCATTCAGTTTCCTCTCCTCTCTCCCCTTTATATGAGTTTCACCATTCCATTCTTGTAATAGCTCGGTACCTTTTTGCCTTCTCTTCCAACTTTTTTTTTTGGGACAAAACAAGACCACTCTCTCTTTCTCTCTCTGTACATGTTTATGTGTGTTCATCGATGATACCAACTTATCGCTATTCATCATTAGTGCCTTCTACGATGCCTTTAGATCTTAATGACGGAGATCAAAACCATCAAGCCTCTTCTTCATCTTCTTCTCCACCACATCAACATCATGATCAAACAACAAACCACTCACAAACTGATCACGAGGAGGCCGAGAAGAATATTATTCCTTCTGGCAGATCATGGAAGAAAGAAGGTAGGAATGATCAAACTGATGAAGGATCAGTGAAGTGGATGTCTTCGAAGATGAGAATGATGCGGAAAATGATGGTTTCAGATCAAACTGTGCATGAGTTTGAAGATCATCAGAAGGAACAGTTATCATCATCTCCAGCAAATTATAACAGCTGTAACAGTTCTAGATTTTGTTCAAACCACAATAATAATATCATGAGTGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTTTGGAGGAGTGGTCCAACAGGCCCCAAGTCACTTTGCAACGCCTGTGGAATTCGACAAAGGAAGGCAAGGCGTGCCGCGGCGGCAGCAGCAGCATCGGCAAACGGCACAATTGTGGCACCTGAGGCTTCTCTGAAGGGAAACAAGATACACAAAAAAAAGAAGCCAGGGATAATAGGGTGCGCACCACAGTTGAAAAAGAAGCGTAAGCGTGGAGTGAAGCCGGGTGAAGGTAGAACCAGAAACAAGTATGGTTTGGAGGATTTCGCCATAAGCTTAAGCAAGAACTTGTCTCTGCAACAAGTTTTCCCGCAGGACGAGAAGGAGGCTGCCATTCTGCTCATGGCTTTATCTTATGGGCTTGTTCATGGATAA 1014 0.4389 MGSAGELVFHTLHSVSSPLSPLYEFHHSILVIARYLFAFSSNFFFWDKTRPLSLSLSVHVYVCSSMIPTYRYSSLVPSTMPLDLNDGDQNHQASSSSSSPPHQHHDQTTNHSQTDHEEAEKNIIPSGRSWKKEGRNDQTDEGSVKWMSSKMRMMRKMMVSDQTVHEFEDHQKEQLSSSPANYNSCNSSRFCSNHNNNIMSVRVCADCHTTKTPLWRSGPTGPKSLCNACGIRQRKARRAAAAAAASANGTIVAPEASLKGNKIHKKKKPGIIGCAPQLKKKRKRGVKPGEGRTRNKYGLEDFAISLSKNLSLQQVFPQDEKEAAILLMALSYGLVHG 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1509 337 Gene3D - 195 288 IPR013088 GO:0006355|GO:0008270
Dere03g1509 337 MobiDBLite consensus disorder prediction 162 181 - -
Dere03g1509 337 Pfam GATA zinc finger 204 237 IPR000679 GO:0006355|GO:0043565
Dere03g1509 337 MobiDBLite consensus disorder prediction 81 107 - -
Dere03g1509 337 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 84 337 - -
Dere03g1509 337 SMART GATA_3 198 251 IPR000679 GO:0006355|GO:0043565
Dere03g1509 337 CDD ZnF_GATA 203 235 IPR000679 GO:0006355|GO:0043565
Dere03g1509 337 MobiDBLite consensus disorder prediction 108 140 - -
Dere03g1509 337 ProSitePatterns GATA-type zinc finger domain. 204 229 IPR000679 GO:0006355|GO:0043565
Dere03g1509 337 ProSiteProfiles GATA-type zinc finger domain profile. 202 234 IPR000679 GO:0006355|GO:0043565
Dere03g1509 337 MobiDBLite consensus disorder prediction 81 146 - -
Dere03g1509 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1509 Dere-ChrDere03 25014331 25015880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1509 131 337 C2C2-Gata Transcription Factor Family AT4G26150 42.616 1.54e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere03g1509 GATA 7.2e-17 CL0167