Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1473 ATGAGGGAGGGCTTCTCTTTGCTAATGCCATCTCAACCACTGTTTTCCTGTGTTCTAACTGCGATGGGCGAAGACAAGGCAATAAGCCTTGAGGAGATCAAGAACGAGGCTGTTGATCTGGAACGTATTCCCATTGAGGAAGTGTTTGAGCAATTGAAATGTACCAGAGAAGGTTTGTCCTCGGAGGAAGGAGCCAATCGGCTTCAGATATTTGGGCCCAACAAGCTAGAAGAAAAGAAGGAGAGCAAATTCCTGAAGTTTCTTGGGTTCATGTGGAATCCACTGTCATGGGTGATGGAAGCTGCAGCTCTGATGGCGATTGCTCTTGCAAATGGTGATGGAAAGCCCCCAGATTGGCAGGACTTTGTGGGTATTATATGTTTGTTGCTGATTAACTCCACTATCAGTTTCATTGAAGAAAACAATGCTGGAAATGCTGCTGCTGCTCTTATGGCCGGTCTTGCTCCAAAGACAAAGGTTCTTAGAGATGGTAAATGGAATGAGGAAGAAGCTGCAATTCTGGTTCCTGGAGATATCATAAGCATTAAACTAGGTGACATCATTCCTGCTGATGCTCGCCTTCTTGAGGGTGATCCGTTGAAGGTTGATCAATCTGCTCTGACTGGAGAGTCACTTCCTGTGACCAAGAACCCTGGTGATGAAATCTTCTCTGGCTCAACTTGCAAACAAGGTGAAATTGAAGCTGTTGTTATTGCAACTGGTGTCCACACATTCTTTGGGAAGGCTGCTCATCTTGTGGACAGCACCAACCAAGTTGGGCATTTCCAGAAGGTTCTCACAGCAATTGGGAACTTCTGCATTTGCTCCATTGCTGTTGGAATGTTGGCTGAGATCATAGTCATGTACCCGATCCAACACCGAAAGTACAGAGATGGGATTGACAACCTCTTGGTCCTCTTGATTGGAGGAATCCCCATTGCTATGCCCACTGTGTTGTCTGTGACAATGGCCATTGGTTCTCACAGGCTCTCTCAGCAAGGTGCCATCACCAAGCGTATGACTGCCATTGAAGAGATGGCTGGTATGGATGTTCTTTGCAGTGACAAGACTGGGACACTCACCCTTAACAAGCTTAGTGTTGACAAGAACTTAATTGAGGTCTTTGCAAAGGATGTAGACAAGGAACATGTGATTCTTCTTGCTGCAAGGGCTTCCAGAACTGAAAACCAGGATGCCATAGACGCTGCCATTGTTGGAATGCTCGCTGACCCAAAAGAGGCAAGGGCTGGGATTAGAGAGGTGCATTTCTTGCCATTCAATCCTGTTGACAAGAGAACAGCTTTGACTTACATCGATGCTGATGGAAATTGGCACCGTGCAAGCAAAGGTGCTCCTGAGCAGATCATGAACCTGTGTAACCTAAGGGAAGATGCTAAGAAGAAGGTCCATGCTATGATTGACAAGTTTGCAGAGAGAGGGCTACGTTCGCTTGCTGTTGCCAGACAGGAAGTTCATGAGAAAACGAAAGAAAGCCCTGGTGGTCCATGGCAGTTTGTTGGCTTGTTGTCACTGTTCGATCCCCCAAGGCATGACAGTGCTGAAACCATTCGCAAAGCTCTTAATCTTGGAGTAAATGTGAAGATGATTACTGGTGATCAACTAGCAATTGCAAAGGAGACTGGAAGGAGACTTGGCATGGGAACAAACATGTACCCATCTGCTTCCTTGCTTGGTCAAGACAAAGATGCAAGTATTGCGGCACTTCCTGTAGAAGAGTTGATTGAGAAGGCAGATGGATTTGCTGGAGTATTTCCTGAGCACAAATATGAAATTGTAAAGAAGTTGCAAGAGAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTCAATGATGCCCCTGCTCTGAAGAAGGCAGATATCGGTATTGCAGTTGCTGATGCCACTGATGCCGCGAGAAGTGCCTCCGATATTGTCTTGACTGAACCTGGATTGAGTGTTATTATCAGTGCAGTCTTGACTAGCAGAGCTATTTTCCAAAGAATGAAAAACTACACTATTTATGCAGTCTCTATCACTATTCGTATAGTGTTTGGCTTCATGCTTATTGCCCTGATATGGAAATTTGACTTCTCTCCTTTCATGGTTTTGATTATTGCCATTCTAAATGATGGAACAATCATGACAATTTCAAAGGACAGAGTGAAGCCATCTCCCTTGCCTGATAGCTGGAAACTGAAAGAAATTTTTGCCACTGGGATTGTGCTTGGAGGTTATCTGGCACTGATGACTGTCATATTTTTCTGGGCAATGAAAGAAACTGATTTCTTCCATGACAAATTTGGAGTCAGACCTCTGAACGATAGGCCACATGAAATGATGTCTGCTTTGTACCTACAAGTCAGCATAGTGAGCCAGGCTCTGATATTTGTAACCCGTTCTCGTAGCTGGTCCTATGTTGAACGCCCTGGAATGCTTTTAGTCACTGCTTTCATTATTGCTCAGCTGATTGCCACCTTAATAGCAGTGTATGCCAACTGGGGCTTTGCAAAGATCCAAGGAATTGGGTGGGGTTGGGCTGGAGTCATCTGGCTCTATAGCATTGTCTTCTATGTTCCACTTGACTTGATGAAGTTTGCTATTCGCTACATCTTAAGTGGCAAGGCTTGGCTGAATCTGCTAGAAAACAAGACTGCCTTCACCACCAAGAAAGACTATGGAAAGGAGGAGAGGGAGGCTCAATGGGCACTTGCTCAGAGAACCCTGCATGGGCTTCAACCACCAGAAACTTCTAGCATTTTTAACGACAAGAGCAGTTACAGAGAGCTGTCCGAGATTGCTGAGCAGGCCAAGAGACGTGCCGAAGTTGCAAGGCTTCGCGAGCTTCACACACTTAAGGGTCATGTTGAGTCAGTGGTGAAGCTGAAAGGTCTGGACATTGATACAATCCAGCAGCACTACACTGTGTGA 2928 0.4556 MREGFSLLMPSQPLFSCVLTAMGEDKAISLEEIKNEAVDLERIPIEEVFEQLKCTREGLSSEEGANRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAALMAIALANGDGKPPDWQDFVGIICLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWNEEEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEIFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKDVDKEHVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDADGNWHRASKGAPEQIMNLCNLREDAKKKVHAMIDKFAERGLRSLAVARQEVHEKTKESPGGPWQFVGLLSLFDPPRHDSAETIRKALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGGYLALMTVIFFWAMKETDFFHDKFGVRPLNDRPHEMMSALYLQVSIVSQALIFVTRSRSWSYVERPGMLLVTAFIIAQLIATLIAVYANWGFAKIQGIGWGWAGVIWLYSIVFYVPLDLMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSSIFNDKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1473 975 FunFam ATPase 4 plasma membrane-type 597 839 - -
Dere03g1473 975 NCBIfam plasma-membrane proton-efflux P-type ATPase 58 830 IPR006534 GO:0008553|GO:0016020|GO:0120029
Dere03g1473 975 Coils Coil 926 946 - -
Dere03g1473 975 NCBIfam HAD-IC family P-type ATPase 125 373 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere03g1473 975 NCBIfam HAD-IC family P-type ATPase 587 700 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere03g1473 975 SUPERFAMILY HAD-like 349 659 IPR036412 -
Dere03g1473 975 SFLD p-type atpase 335 663 IPR044492 -
Dere03g1473 975 PANTHER CALCIUM-TRANSPORTING ATPASE 41 907 - -
Dere03g1473 975 Gene3D - 924 975 - -
Dere03g1473 975 Gene3D - 118 839 - -
Dere03g1473 975 SUPERFAMILY Calcium ATPase, transduction domain A 156 253 IPR008250 -
Dere03g1473 975 Gene3D - 350 649 IPR023214 -
Dere03g1473 975 FunFam Plasma membrane ATPase 365 512 - -
Dere03g1473 975 Pfam haloacid dehalogenase-like hydrolase 349 626 - -
Dere03g1473 975 CDD P-type_ATPase_H 58 865 IPR006534 GO:0008553|GO:0016020|GO:0120029
Dere03g1473 975 PRINTS H+-transporting ATPase (proton pump) signature 612 628 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere03g1473 975 PRINTS H+-transporting ATPase (proton pump) signature 584 600 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere03g1473 975 PRINTS H+-transporting ATPase (proton pump) signature 469 487 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere03g1473 975 PRINTS H+-transporting ATPase (proton pump) signature 643 668 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere03g1473 975 PRINTS H+-transporting ATPase (proton pump) signature 784 805 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere03g1473 975 FunFam Plasma membrane ATPase 156 240 - -
Dere03g1473 975 PRINTS P-type cation-transporting ATPase superfamily signature 507 518 - -
Dere03g1473 975 PRINTS P-type cation-transporting ATPase superfamily signature 353 367 - -
Dere03g1473 975 PRINTS P-type cation-transporting ATPase superfamily signature 203 217 - -
Dere03g1473 975 PRINTS P-type cation-transporting ATPase superfamily signature 612 631 - -
Dere03g1473 975 PRINTS P-type cation-transporting ATPase superfamily signature 635 647 - -
Dere03g1473 975 PRINTS P-type cation-transporting ATPase superfamily signature 529 539 - -
Dere03g1473 975 ProSitePatterns E1-E2 ATPases phosphorylation site. 355 361 IPR018303 -
Dere03g1473 975 SUPERFAMILY Calcium ATPase, transmembrane domain M 39 871 IPR023298 -
Dere03g1473 975 Pfam Cation transporter/ATPase, N-terminus 43 105 IPR004014 -
Dere03g1473 975 Gene3D - 156 240 - -
Dere03g1473 975 FunFam Plasma membrane ATPase 504 660 - -
Dere03g1473 975 SFLD Haloacid Dehalogenase 335 663 - -
Dere03g1473 975 Gene3D - 365 512 IPR023299 GO:0000166
Dere03g1473 975 Pfam E1-E2 ATPase 155 332 - -
Dere03g1473 975 SMART Cation_ATPase_N_a_2 39 111 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1473 Dere-ChrDere03 24366606 24373632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1473 29 975 Primary Pumps ATPases AT4G30190 84.898 0.0 1652