Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1467 ATGGAGTGGGACAGCAATTCGGATCTAAGCGGGGACGATGAGGAAACTTTCGTGCTTAACGATGGTGGCCCACTTCCCTTGCCGGTCGAGAACTTGCTCCAAACGGCTCCCTGTGGGTTCGTTGTCACTGATGCGCTCGAGCCTGACCACCCAATTATTTATGTCAATACTGTGTTCGAGATGGTCACTGGGTATCGGGCAGAGGAAGTACTTGGTCGAAACTGCCGGTTCTTGCAGTGTCGGGGTCCATTTGCTAAAAGAAGGCATCCGTTGGTGGACTCAACTGTAGTTTCAGAAATTAGGAGATGCCTTGAGGAGGGGATTGAATTCCAAGGTGAGTTACTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGCTGACGCCCATATATGGAGATGATGAGACTATAACACATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGTTCTGGGTACTTCAATTAAGGAATCTGTTAAATCATCTGATCGGTTTCATTCTGTGCTTTCAACACTCAGTTCTCTACCAGTTGGGGACCGTAATGTATCTCGTGGAGTTTGTGGGATACTGCAATTGAGTGATGAGGTTATCTCTCTCAAGATACTTGCCTGCTTAACTCCAAGAGATATAGCATCTGTGGGCTCTGTCTGCAGGCGATTATATGAGCTGACAAAAAATGAAGACCTATGGAGGATGGTATGCCAAAATGCATGGGGGAGTGAAACAACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGTTCGGCTGGCAAGGGAGTTGACCACTCTTGAAGCAGCAGCATGGAGGAAGCTGACCGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTCCTTTTTGGTGGTGAAGGGGTTAACATGCAGCCTATGAATGACACCTTTGTGCTAGATCTAAACTCGAAAAATCCTGAGTGGCAACACGTCCAGGTGAGCTCTCCTCCTCCTGGTCGTTGGGGCCACACAATTTCTTGTGTTGATGGTTCTAATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTTTTTGTGCTGGACCTGGATGCAAAACCTCCAACTTGGCGTGAAATATCTGGATTGGCGCCTCCGCTTCCAAGATCATGGCACAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGAGTACTTTTGAGTGACACGTTCCTCCTTGATCTGTCAATGGAGAAACCTGTCTGGAGAGAGATACCTGTGGCTTGGACACCGCCTTCTCGTCTGGGGCACACACTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTTGCTAAGAGTGGGCCCCTCCGGTTTCGTTCCAGTGATGTATTCACCATGGATTTAAGCGAGGAGGAACCATGTTGGAGATGTGTAACTGGGAGTGGAATGCCTGGTGCTGGGAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTTGCTGTTAGTCTTCCAGGTGGGAGAATCTTGATATTTGGTGGATCCATTGCAGGTCTTCACTCTGCCTCCCAGCTTTACATCTTGGACCCAACCGATGAGAAACCTACATGGAGAATCTTGAATGTACCTGGGCACCCTCCAAGATTCGCTTGGGGACACAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGTGGCCAAACTGGAGAGGAATGGATGCTAAGCGAGCTCCATGAGCTTTCTCTGGCAAGTTCTGTAATCTAG 1833 0.4828 MEWDSNSDLSGDDEETFVLNDGGPLPLPVENLLQTAPCGFVVTDALEPDHPIIYVNTVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPVLGTSIKESVKSSDRFHSVLSTLSSLPVGDRNVSRGVCGILQLSDEVISLKILACLTPRDIASVGSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWVRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSKNPEWQHVQVSSPPPGRWGHTISCVDGSNLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSIAGLHSASQLYILDPTDEKPTWRILNVPGHPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1467 610 Pfam Kelch motif 451 502 IPR011498 GO:0005515
Dere03g1467 610 Pfam Kelch motif 518 565 IPR011498 GO:0005515
Dere03g1467 610 CDD PAS 36 146 IPR000014 -
Dere03g1467 610 Pfam F-box-like 206 244 IPR001810 GO:0005515
Dere03g1467 610 SUPERFAMILY F-box domain 189 260 IPR036047 GO:0005515
Dere03g1467 610 CDD F-box_AtADO-like 197 243 - -
Dere03g1467 610 FunFam Adagio protein 1 195 242 - -
Dere03g1467 610 Pfam Galactose oxidase, central domain 358 405 - -
Dere03g1467 610 ProSiteProfiles PAS repeat profile. 29 107 IPR000014 -
Dere03g1467 610 FunFam Putative LOV domain-containing protein 271 475 - -
Dere03g1467 610 FunFam Putative LOV domain-containing protein 476 609 - -
Dere03g1467 610 NCBIfam PAS domain S-box protein 32 146 IPR000014 -
Dere03g1467 610 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 28 607 - -
Dere03g1467 610 FunFam Adagio protein 1 27 158 - -
Dere03g1467 610 SUPERFAMILY Kelch motif 281 498 IPR015915 GO:0005515
Dere03g1467 610 Gene3D - 192 242 - -
Dere03g1467 610 Pfam PAS domain 37 147 IPR000014 -
Dere03g1467 610 Pfam Galactose oxidase, central domain 294 344 - -
Dere03g1467 610 SUPERFAMILY PYP-like sensor domain (PAS domain) 36 147 IPR035965 -
Dere03g1467 610 Gene3D PAS domain 22 158 - -
Dere03g1467 610 Gene3D - 272 424 IPR015915 GO:0005515
Dere03g1467 610 Gene3D - 439 609 IPR015915 GO:0005515
Dere03g1467 610 SUPERFAMILY Kelch motif 445 604 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1467 Dere-ChrDere03 24249071 24259136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1467 33 241 AGC Kinase Gene Family AT5G58140 25.751 9.81e-15 75.9