Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1462 ATGGCTGGAAATTTGAAGAAAAGCAACTTTGAAGTGCTGGGAATGTGCTGCAACGCAGAGGTGGCTCTGATTGAAACGATTCTGAAGCGTCTCCATGGAGTCCAGCAGATTTCAGTCATCTTCCCTACCCGAACAGTCACTGTATTCCATGATGCTGATGCGCTGAATTCGGGAAGGCTTGAAGCTAGTTTGAGACCACAAGGAGAGACTAAGTATGGAAAGAAATGGCCAGCCTCTACTACTTTGAGTGATGTTCAGAGGCGTAGCCTCCATAAGGAATCATATGCTGGACATCAACATTCTAATTCTGCTGGCAGTTTGTGGTACTCTTGCTTTTGCAAGATTACTGGGAGGCCGGAATCATCATCTTCCTATTCTCCATTGCTGAATGGCTTGAGACAAGAGCAAGTTACAAGGTTTGATCCCATACTTCCACTTCGACGCTTTGCTGCTGTGGTCACCATGTCCTCTTTAACAAAGATGGCTCCACAAAAGACTGGGCAACATGTTGACGTCAATGCAGTTAAGATCAACACCATCCTTGCAGTCAAGGCCGGTGATGCTATTCCCCTTGATGGTTATATTAGTGTGAAAGCTACTGAATTGGCAAATGACACAGCAGTGGCTAGAATGACAAAGCTTGTTGAAGAGGTTCATGACAGAAAATCAAGAACCCAGAGATTCATAGATACCTGTGCAAAGTACTATTTACCTGGTCAGCGTTACTTCTGCTGCACTTGTGGAATAGGAAGGCTACACTCTATCAAACCAAGCCCTGAAAATGTGGAGGATTTTCATAATTTTCCAGGGGAAGGAGTATTTGGTAAAATCGATGGGAAAGATGTCTATATTGGCAACAGGAAAATATATGTGAGACCCGACTGTGAAAGAGACACAGATTTTCAAAGCAAAGGAGAAATAAATGGCTACATATGCTGTGGACCAACTCTAGTTGGAGTCTTCGCACTATCTGATACACGCAGATCTGTTGCCTTAGAGGCAATAGAACAGCTCAAGTCATTAGGCGTGAAATCAGCCATGCTGACAGGAGATAGCATTCAAGCAGCTAAGATTGTTCAGAATCAGTTGAACTATGCTCTAGACGTAGTCCATGCAGAGCTTCTACCAGATGAAAAGGCAAACATCATCAAGAATTTCAAGAAAGATGGGCTAACAGCCATGATTGGAGACGGTATAAATGATGCACCTGCATTAGCCACAGCCAACATTGGCATTGTAACGGGAATATCAGGTTCAGCTCTCACAGTTGAGACTGGGCATGCAATTCTCATGTCAAATGACATCCGAATGATACCTGAAGCCAATACCTAG 1332 0.4384 MAGNLKKSNFEVLGMCCNAEVALIETILKRLHGVQQISVIFPTRTVTVFHDADALNSGRLEASLRPQGETKYGKKWPASTTLSDVQRRSLHKESYAGHQHSNSAGSLWYSCFCKITGRPESSSSYSPLLNGLRQEQVTRFDPILPLRRFAAVVTMSSLTKMAPQKTGQHVDVNAVKINTILAVKAGDAIPLDGYISVKATELANDTAVARMTKLVEEVHDRKSRTQRFIDTCAKYYLPGQRYFCCTCGIGRLHSIKPSPENVEDFHNFPGEGVFGKIDGKDVYIGNRKIYVRPDCERDTDFQSKGEINGYICCGPTLVGVFALSDTRRSVALEAIEQLKSLGVKSAMLTGDSIQAAKIVQNQLNYALDVVHAELLPDEKANIIKNFKKDGLTAMIGDGINDAPALATANIGIVTGISGSALTVETGHAILMSNDIRMIPEANT 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1462 443 Gene3D - 259 327 IPR023299 GO:0000166
Dere03g1462 443 PRINTS P-type cation-transporting ATPase superfamily signature 319 330 - -
Dere03g1462 443 PRINTS P-type cation-transporting ATPase superfamily signature 395 414 - -
Dere03g1462 443 PRINTS P-type cation-transporting ATPase superfamily signature 341 351 - -
Dere03g1462 443 ProSiteProfiles Heavy-metal-associated domain profile. 6 72 IPR006121 GO:0046872
Dere03g1462 443 Pfam haloacid dehalogenase-like hydrolase 256 409 - -
Dere03g1462 443 CDD HMA 10 53 IPR006121 GO:0046872
Dere03g1462 443 SUPERFAMILY HAD-like 257 441 IPR036412 -
Dere03g1462 443 SUPERFAMILY HMA, heavy metal-associated domain 3 68 IPR036163 GO:0046872
Dere03g1462 443 Gene3D - 2 69 - -
Dere03g1462 443 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 4 81 - -
Dere03g1462 443 Gene3D - 328 441 IPR023214 -
Dere03g1462 443 NCBIfam HAD-IC family P-type ATPase 307 415 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1462 Dere-ChrDere03 24197291 24206798 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1462 250 441 Primary Pumps ATPases AT4G30110 58.673 8.67e-65 222