Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1457 ATGGACTCTTCTTCTACCAACTGGCTCGCTTTCTCTCTTTCTAACCATTCTTCTCTTTCCCTCTTCCAGTCCTTCTCTTCTGCTCAACCAGGTAGCACCGTCGATGCATCGCCTGAGGCAACCGTCGGAGGAGGTGCAACCAACAACAGCCTCTCGGTCTTCGCCGGCGGCCACAAGTTCGAGGACTTCCTGGGCGGCTCGACCGCCACGTCGGCAGCAGCTGCGGCACCTCAACCGCCCGCTCCTCAGTTCTCCGGCGCCAACATATTCGATTCTGAACTCAAAAACATAACCTCTGGCTTCGTCCCCGGCTTGGCCGCCGCCAAACAAGCCGAGCCTCAAAAACAGGCGGTGGCTCCGGCCGAGCCGTCCCCCAAGAAGTACGCCGACACCTTCGGCCAACGGACCTCCATCTACCGCGGTGTCACCCGGCATAGATGGACGGGAAGATATGAAGCTCATCTCTGGGATAATAGTTGTAGAAGAGAAGGGCAGAGTAGGAAAGGAAGGCAAGGTGGCTACGATAAGGAAGAGAAGGCTGCCAGAGCTTATGATCTTGCAGCTCTCAAATATTGGGGTCCAACTACTACTACCAACTTTCCGATTCTGAATTACGAGAAGGAACTGGAAGAGATGAAGAACATGACGAGGCAGGAATTTGTTGCTTCACTTCGAAGGAAGAGTAGTGGTTTCTCTAGAGGGGCCTCAATATACAGAGGAGTGACAAGACACCACCAGCATGGGCGATGGCAAGCGAGAATTGGCAGAGTTGCCGGAAATAAAGACCTTTACCTTGGCACTTTTAGCACGCAAGAAGAAGCTGCAGAGGCGTATGATATTGCAGCCATAAAATTCAGAGGACTTAATGCAGTGACCAACTTTGACATGAGCAGATACGACGTGAAGAGCATAGCCAGCAGCAACCTTCCCATTGGGGGATTCTTATCCAAAGCCAGAAACTCATCGGATTCTTCTGTATCCGATGGCAAAAGCCGCGAGGGAAGCCGATCCGCTGATAATACCGACCGAGATCTGTCTTCACAGTCGACAGTAACCTTTGCATCACAACCTTCAACCTCCAATCTCAGCTTCGCTATACCCATCATCAAGCAAGACCCATACTCAGATTACTGGTCCAACATTCTCGGGTATCAAAACCCTGCTTCCCTCAAGAACTCTTCTAGTAATGTCACTGCTATTGCTTCTGCATTGCAAAGCTATAACAATAATAATAGCACCACAGTACCGTTCAACTTGGAGTTGCAGAGCAATAATAACGCTTTTGTAGCTGGAGGTGTGTATGCTCAGAACATTCAGCAACAAAGTGGAAGCAATAATAGTACAGTTGGTTCAAGCTCAAGTTCGATCCCATTGGCCACACCAGTTGGTTTAAATAGTAATAGTAGTTATGAAAGCTCTTCTATATATGGAAACTGGAGTGTTGGGCCTGCTCTGCACACATTCCAAACACATGCAAAAAGCAGTCTCTTTCAAACGCCAATATTTGGGATGGAATGA 1518 0.4921 MDSSSTNWLAFSLSNHSSLSLFQSFSSAQPGSTVDASPEATVGGGATNNSLSVFAGGHKFEDFLGGSTATSAAAAAPQPPAPQFSGANIFDSELKNITSGFVPGLAAAKQAEPQKQAVAPAEPSPKKYADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPILNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIASSNLPIGGFLSKARNSSDSSVSDGKSREGSRSADNTDRDLSSQSTVTFASQPSTSNLSFAIPIIKQDPYSDYWSNILGYQNPASLKNSSSNVTAIASALQSYNNNNSTTVPFNLELQSNNNAFVAGGVYAQNIQQQSGSNNSTVGSSSSSIPLATPVGLNSNSSYESSSIYGNWSVGPALHTFQTHAKSSLFQTPIFGME 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1457 505 CDD AP2 236 297 IPR001471 GO:0003700|GO:0006355
Dere03g1457 505 ProSiteProfiles AP2/ERF domain profile. 237 295 IPR001471 GO:0003700|GO:0006355
Dere03g1457 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 92 396 - -
Dere03g1457 505 FunFam AP2-like ethylene-responsive transcription factor ANT 137 203 - -
Dere03g1457 505 SMART rav1_2 138 207 IPR001471 GO:0003700|GO:0006355
Dere03g1457 505 SMART rav1_2 237 301 IPR001471 GO:0003700|GO:0006355
Dere03g1457 505 Gene3D AP2/ERF domain 138 203 IPR036955 GO:0003700|GO:0006355
Dere03g1457 505 Gene3D AP2/ERF domain 237 297 IPR036955 GO:0003700|GO:0006355
Dere03g1457 505 FunFam AP2-like ethylene-responsive transcription factor 236 297 - -
Dere03g1457 505 SUPERFAMILY DNA-binding domain 236 297 IPR016177 GO:0003677
Dere03g1457 505 Pfam AP2 domain 237 287 IPR001471 GO:0003700|GO:0006355
Dere03g1457 505 Pfam AP2 domain 138 193 IPR001471 GO:0003700|GO:0006355
Dere03g1457 505 CDD AP2 137 203 IPR001471 GO:0003700|GO:0006355
Dere03g1457 505 MobiDBLite consensus disorder prediction 318 352 - -
Dere03g1457 505 ProSiteProfiles AP2/ERF domain profile. 138 201 IPR001471 GO:0003700|GO:0006355
Dere03g1457 505 SUPERFAMILY DNA-binding domain 137 202 IPR016177 GO:0003677
Dere03g1457 505 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Dere03g1457 505 PRINTS Ethylene responsive element binding protein signature 277 297 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1457 Dere-ChrDere03 24083484 24086507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1457 78 505 AP2-EREBP Transcription Factor Family AT5G57390 54.688 9.80e-148 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere03g1457 AP2 9.6e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1457 03 24083484 24086507 Dere03g1457 03 24083484 24086507 ECH