Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1439 ATGGAAACTCCACATGACGAATTCATTTTCCGTTCTAAACTGCCCGACATTTACATCCCAACCCACCTCCCTTTGCACACTTACTGCTTCGAGAACTTGTCCCAATTCAGAGACCGTCCCTGCCTCATCAACGGCAGCACCGGCGAGACTTTCACCTACGCCGATGTGGAACTCACCGCCCGGAAAGTCGCCTCTGGTCTCAACAACCTCGGCATCGAACAAGGCGACGTCATCATGCTTCTCCTCCAAAACTGTCCCCACTTCGTCTTCGCCTTCCTCGGAGCTTCCCACCGTGGCGCCACCGTAACAACAGCCAACCCATTTTACACTCCGGCCGAGGTCGCAAAGCAAGCCGTGGCTTCCAAAACCAAGATGATCATCACACAAGGATCCTTCATCGAAAAGGTTAAGGATTTCGCGAGAGACAGTGGCGTGAAAGTGATGTGTATCGACGATGATAAAGTACCCCCAGAGGAGGATGGGGTTGATTTCCTACGTTTCTCGGATTTAACGGAGGCCGACGAGGGTGAGATCCCGCCGGTGAAGATCTCCCCAGACGACGTCGTTGCGCTGCCTTATTCATCTGGTACCACTGGACTTCCGAAGGGGGTTATGCTAACCCACAAGGGTCTAGTTACCAGTGTGGCTCAACAGGTTGATGGAGAGAACCCTAATCTGTATTTTCACAGCGAGGATGTGATTGCATGCGTTTTGCCTCTGTTTCACATATATTCTCTGAACTCCGTTTTGCTGTGTGGGCTTCGAGTCGGTGCTGCTATTCTGATCATTCAGAAGTTCGAGATAGGGACGTTGCTGGAGTTGGTCCAGAAACACAAAGTGACCATTGCGCCGTTTGTACCACCAATCGTATTGGCCATTGCAAAGACCCCAAACCTGCATCGATACGACCTGTCGTCCATTAGGATGATCATGTCTGGTGCGGCTCCCATGGGAAGTGAGCTCGAGGATGCCGTGAGGACCAAACTTCCCAACGCCACACTCGGACAGGGATATGGCATGACGGAGGCAGGGCCAGTGCTTGCGATGAGCTTGGCGTTTGCGAAAGCGCCATTTGGGATAAAATCAGGTGCGTGCGGGACCGTGGTAAGAAACGCTGAGATGAAGATCGTTGACCCTGAGACCGGAGCATCTCTAGCCAGGAATCTAGCCGGCGAGATCTGCATTAGAGGCAATCAGATTATGAAAGGGTATCTAAACGACCCAGAGGCAACACAGAGAACGATAGACGACAGAGGATGGCTGCACACAGGTGACATTGGATACATAGACGACGACAAGGAGCTCTTCATCATAGATCGTTTAAAGGAGCTTATCAAATACAAAGGCTTCCAGGTGGCTCCCGCTGAGCTGGAGGCTATGCTCATTTCCCATCCCAATATTTCTGATGCTGCTGTTGTACCGATGAAAGATGAAGCTGCAGGAGAGGTTCCCGTTGCATTTGTTGTCAGATCCAACGGCTCTAAGATCTCCGAACATGAAATCAAACAGTTCATCTCTCAACAGGTTGTGTTTTACAAGAGAATCAATAAGGTTATTTTCGTAGACTCCATTCCTAAGGCACCCTCTGGCAAGATTCTGCGCAAAGATCTAAGAGCAAGGCTCACAGCAAGTTAG 1635 0.5064 METPHDEFIFRSKLPDIYIPTHLPLHTYCFENLSQFRDRPCLINGSTGETFTYADVELTARKVASGLNNLGIEQGDVIMLLLQNCPHFVFAFLGASHRGATVTTANPFYTPAEVAKQAVASKTKMIITQGSFIEKVKDFARDSGVKVMCIDDDKVPPEEDGVDFLRFSDLTEADEGEIPPVKISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSEDVIACVLPLFHIYSLNSVLLCGLRVGAAILIIQKFEIGTLLELVQKHKVTIAPFVPPIVLAIAKTPNLHRYDLSSIRMIMSGAAPMGSELEDAVRTKLPNATLGQGYGMTEAGPVLAMSLAFAKAPFGIKSGACGTVVRNAEMKIVDPETGASLARNLAGEICIRGNQIMKGYLNDPEATQRTIDDRGWLHTGDIGYIDDDKELFIIDRLKELIKYKGFQVAPAELEAMLISHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKISEHEIKQFISQQVVFYKRINKVIFVDSIPKAPSGKILRKDLRARLTAS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1439 544 FunFam Long-chain-fatty-acid--CoA ligase FadD 11 442 - -
Dere03g1439 544 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Dere03g1439 544 Gene3D - 442 543 IPR045851 -
Dere03g1439 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 539 - -
Dere03g1439 544 Pfam AMP-binding enzyme 31 447 IPR000873 -
Dere03g1439 544 SUPERFAMILY Acetyl-CoA synthetase-like 8 542 - -
Dere03g1439 544 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Dere03g1439 544 Gene3D - 3 441 IPR042099 -
Dere03g1439 544 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Dere03g1439 544 CDD 4CL 19 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1439 Dere-ChrDere03 23755640 23759575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1439 5 509 Monolignol Biosynthesis Gene Families AT1G51680 70.530 0.0 726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1439 03 23755640 23759575 Dere03g1439 03 23755640 23759575 ECH