Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1438 ATGCATGCATTCCCTCGCCCGCGCCCATCTCCTCCAGTAACTGGAATGGCTGTTTTCTCTAATAATTGCCTCAATTTTCTCTTTCGGTCTCCACCAACCTCAGACCATTTGGATTCAATGGAAACTGCTTGCCCGGAATTCATCTTCCGTTCCAAACTCCCAGACATTCCCATCCCAACCCACCTTCCTCTCCACACATACTGCTTCGAGAACCTCTGGCAGTTCAGAGACCGACCTTGCCTCATCAACGGCGAAACCGGCGAGACTTTCACGTATGCCGAGGTGGAGCTCACCGCCCGCCGCGTCGCAGCCGGCCTCAACAACCTCGGCATCGGGCAAGGTGACGTCATCATGCTGGTGCTCCGGAACTGTCCCCAATTCGCCCTCGCCTTCCTCGGCGCCTCCTGCCGCGGCGCGGCGGTGACCACGGCGAACCCGTTCTTCACACCGGCAGAGCTGGCGAAACAAGCCGTGGCGTCCAAGTCGAAGCTGATCATAACCCAAGCGGCTTACATCGAGAAAATCAAGGATTTCGCGGAAACTCACGGCGTCTTAGTGATGTGCACCGACAATCCTTATCCACAAAACGAAGGCGTTTTACATTGGTCTCTGCTAACCCAAGCAGACGAGGCTGATATGCCGGCCGTTAAGATCAGCCCAGACGACGTCGTGGCACTCCCGTATTCGTCTGGCACTTCCGGTGTTCCAAAGGGGGTGATGCTAACGCATAAGAATCTCGTCACCACAGTGGCTCAGCTAGTGGACGGAGAAAACCCGAACCAGTACACTAGCAGTGAGGATGTGCTTCTCTGTGTGCTTCCCTTGTTTCATATCTATGCGCTTAACTCGATCTTGCTATGCGGGATTCGAGCCGGGGCAGCCATTCTGAACCTGAGCAAATTCGAGATCACTACGTTGTTCGAGATGATCCAGAGATACAAGGTGACGGTGGCGTCGTTTGTGCCTCCCATCCTACTGGCCATTGCGAAGAGTGAGGATGTTGAGCGGTACGACCTGTCGTCTATAAGGATAGTGGTCACTGGGGCCGCACCGGTGAGCGTGGAGCTCGAAGAAGCTCTGAAGGCTAAGCTTCCACATGCCAAACTTGGGCAGGGATATGGTATGACAGAGGCAGGTCCTCTGTCGATAAGCTTAGCGTTTGCGAAGGAGCCGGAGGAGGTAAAATCAGGTGCGTGCGGGTGTGTGATCAGAAACGCTGAGATGAAATTGGTGGACATAGAGACCGGCGCTTCGCTTCCAAGAAACAAAGCGGGCGAGATCTGCATTAGAGGCAACCAAGTAATGAAAGGTTACCTAAACGATGCGAAGGCCACAGAGAGAACCGTAGACAAAGAGGGATGGCTTCACACCGGTGACATCGGGTACATTGACGACGATGACCAGCTCTTCATTGTGGATAGGTTGAAGGAGATTATCAAATACAAAGGCTTCCAAGTGGCCCCCGCTGAGCTCGAGTCCTTGTTGATCGCTCACCCAAATATTTCTGACGCTGCTGTTGTACCGATGAAAGATGAAGCGGCAGGAGAGGTTCCCGTTGCATTTGTTGTCAGATCCAACGGTTCTAAGATCTCCGAGGACGAAATCAAACAGTACATCTCGCAACAGGTGGTGTATTACAAGAGAATCCATAAGGTTATCTTCACTGACACTATTCCTAAAGCTGCCTCTGGCAAAATTTTGCGAAAGGATTTAAAAGCAAGGCTCGCAGAAGATTTGGTCAACTAG 1746 0.5252 MHAFPRPRPSPPVTGMAVFSNNCLNFLFRSPPTSDHLDSMETACPEFIFRSKLPDIPIPTHLPLHTYCFENLWQFRDRPCLINGETGETFTYAEVELTARRVAAGLNNLGIGQGDVIMLVLRNCPQFALAFLGASCRGAAVTTANPFFTPAELAKQAVASKSKLIITQAAYIEKIKDFAETHGVLVMCTDNPYPQNEGVLHWSLLTQADEADMPAVKISPDDVVALPYSSGTSGVPKGVMLTHKNLVTTVAQLVDGENPNQYTSSEDVLLCVLPLFHIYALNSILLCGIRAGAAILNLSKFEITTLFEMIQRYKVTVASFVPPILLAIAKSEDVERYDLSSIRIVVTGAAPVSVELEEALKAKLPHAKLGQGYGMTEAGPLSISLAFAKEPEEVKSGACGCVIRNAEMKLVDIETGASLPRNKAGEICIRGNQVMKGYLNDAKATERTVDKEGWLHTGDIGYIDDDDQLFIVDRLKEIIKYKGFQVAPAELESLLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKISEDEIKQYISQQVVYYKRIHKVIFTDTIPKAASGKILRKDLKARLAEDLVN 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1438 581 FunFam Long-chain-fatty-acid--CoA ligase FadD 50 476 - -
Dere03g1438 581 ProSitePatterns Putative AMP-binding domain signature. 226 237 IPR020845 -
Dere03g1438 581 CDD 4CL 58 571 - -
Dere03g1438 581 Gene3D - 40 475 IPR042099 -
Dere03g1438 581 FunFam 4-coumarate--CoA ligase 2 477 578 - -
Dere03g1438 581 SUPERFAMILY Acetyl-CoA synthetase-like 40 577 - -
Dere03g1438 581 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 47 573 - -
Dere03g1438 581 Pfam AMP-binding enzyme 74 481 IPR000873 -
Dere03g1438 581 Pfam AMP-binding enzyme C-terminal domain 490 565 IPR025110 -
Dere03g1438 581 Gene3D - 476 580 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1438 Dere-ChrDere03 23731341 23739667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1438 46 543 Monolignol Biosynthesis Gene Families AT1G51680 66.667 0.0 667