Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1437 ATGAATTTCCGTTCTAGATCTTCTCGTCATCCTTCAAATGAGAATAATCTTAACCTTGATCTTCTCCTTGAGCCTTCTTCATCTTCTAATTCATCTTCACCCCCAAGTTACAACATCGAGCCTCGCATATTCTCGTGCAACTATTGCCAGAGAAAGTTCTACAGCTCGCAAGCTCTGGGAGGTCACCAAAATGCCCACAAGCTGGAAAGGACACTGGCTAAGAAGAGCAGAGAGGTCAGTTCAGCCATGCAGAGTTTTGGGCTTTCAGAGCATAGCAGCTTCAGTGGCTCGAGCCATCTCGCTCGCGTCGGCTCACCAAATTACCAAGCACAAGCCGGAGGGGTGAGCTATGAAAGAAGAGACTTTGGCTATGGTGGTTCCAAACCCAGGTCGTCTGGTTATGCGTCTGAAAATGTTGAGGAGGATATTGGTCAGCTTGACTTGTCTTTAAGACTTTGA 459 0.4706 MNFRSRSSRHPSNENNLNLDLLLEPSSSSNSSSPPSYNIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREVSSAMQSFGLSEHSSFSGSSHLARVGSPNYQAQAGGVSYERRDFGYGGSKPRSSGYASENVEEDIGQLDLSLRL 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1437 152 MobiDBLite consensus disorder prediction 120 140 - -
Dere03g1437 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Dere03g1437 152 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Dere03g1437 152 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 100 IPR044246 GO:0009788
Dere03g1437 152 FunFam Zinc finger protein 2 23 92 - -
Dere03g1437 152 Gene3D Classic Zinc Finger 27 98 - -
Dere03g1437 152 SUPERFAMILY beta-beta-alpha zinc fingers 41 71 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1437 Dere-ChrDere03 23717879 23718337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1437 11 152 C2H2 Transcription Factor Family AT5G57520 47.619 1.81e-26 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere03g1437 None None None