Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1428 ATGGAATTTGCAAGCAGAGTTGGCAAGTACCGACTCGGCCGGACGATTGGAGAAGGTACATTCGCCAAGGTGAAGCTGGCTGTCAACAGCCACAATGGCCAATATGTTGCAATCAAGATCATTGATAAGAAAATGGTTATGGAGAGCCTTCTCAAGTATCAGGCAACCTTCATCCTTGTCAAAAGAGAGATAAGAACAATGAAGCTTCTGCACCATCCCAATATCGTAAGGATTCATGAGGTTCTTGGCACAAAGACGAAAATATATATTGTGATGGAATATGTATCAGGAGGACAACTATTAGACAAACTGTCTTATGCCAAAAAGTTGAATGAACGTGAAGCAAGGAAGCTTTTCCAGCAACTTATTGATGCTGTGGACTACTGCCATAACAAAGGAGTTTATCATAGAGACCTCAAGCCAGAAAACTTGCTTCTGGACAGCAAAGGGAATCTCAAACTTTCAGATTTTGGGCTAAGTGCACTGCGAAAGCCTGATAATATTCTAACCACCGCGTGTGGCTCCCCAAGTTATGTGGCACCTGAGCTGCTGTATAACAAGGGCTATGACGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTAATCCTTTTTGAATTACTTGCAGGCCATCTACCATTTGATGACCACAACTTGATGAACTTGTATAAGAAGATATGCAGCGCACAATATACATGTCCAGGATGGTTTACAGAAAGTCAGAAGAAACTAATTGCCAAAATACTCGAACCACGTGCTGGAAAGCGAATAACTATACCAGAGATCATAGAAAATGAATGGTTTCAAACAGATTATGTGCCTGCTTGCGGATCTGAATGTGATCAGAACGTTCACATGGATGATGTTAAAGCTGCTTTTGATTCAGTTGAGGAGAATATTTTAGAGACAACAATACCCAAGTCCTCAAGTTTCATTAATGCTTTCCAACTAATAGCCATGTCTCAGGACCTTGATCTATCAGGCCTTTTCGAAGAACAGGATCACAAAAGGCAGAGAACAAGGCTTGGATCCAAGCACAACATCAATGAAACCATAGAAAAAATAGAAACTGCTGCAACAGATGTGAGACTGTCAGTAGAAAAACTGAACAACTTTACGATAAAAATGCACCCCAAGCAGATGATGACTAGATGTTCCAGATCATACTATGACCTATCCGCAAAGGTGATTGAAGTTGCTCCAAGTCACTGTGTTGTAGAGGTATCAAAATCTGCAGGAGACTTAAGATTGTACGAAGAATTTTGTGAAAGTCTATCGAGTCTGCTGACAGTAAAATCTGATGTGTCATCAACATCCCAAGAGTCAGTGGAAGTATGCATCGCTGGAAAAATTAACCAAGATGCTGGGTGCCACGAAGAGTCAAACAGTGAAGATAATAAAGGCATCCGTGGCTATACATCTGCCTGA 1425 0.4154 MEFASRVGKYRLGRTIGEGTFAKVKLAVNSHNGQYVAIKIIDKKMVMESLLKYQATFILVKREIRTMKLLHHPNIVRIHEVLGTKTKIYIVMEYVSGGQLLDKLSYAKKLNEREARKLFQQLIDAVDYCHNKGVYHRDLKPENLLLDSKGNLKLSDFGLSALRKPDNILTTACGSPSYVAPELLYNKGYDGAAADVWSCGVILFELLAGHLPFDDHNLMNLYKKICSAQYTCPGWFTESQKKLIAKILEPRAGKRITIPEIIENEWFQTDYVPACGSECDQNVHMDDVKAAFDSVEENILETTIPKSSSFINAFQLIAMSQDLDLSGLFEEQDHKRQRTRLGSKHNINETIEKIETAATDVRLSVEKLNNFTIKMHPKQMMTRCSRSYYDLSAKVIEVAPSHCVVEVSKSAGDLRLYEEFCESLSSLLTVKSDVSSTSQESVEVCIAGKINQDAGCHEESNSEDNKGIRGYTSA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1428 474 CDD CIPK_C 312 428 - -
Dere03g1428 474 SUPERFAMILY Protein kinase-like (PK-like) 7 312 IPR011009 -
Dere03g1428 474 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Dere03g1428 474 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Dere03g1428 474 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 419 - -
Dere03g1428 474 FunFam Non-specific serine/threonine protein kinase 1 94 - -
Dere03g1428 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Dere03g1428 474 ProSiteProfiles Protein kinase domain profile. 10 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1428 474 Gene3D Phosphorylase Kinase; domain 1 3 99 - -
Dere03g1428 474 Gene3D Transferase(Phosphotransferase) domain 1 100 292 - -
Dere03g1428 474 Pfam Protein kinase domain 10 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1428 474 Gene3D Kinase associated domain 1, KA1 306 430 - -
Dere03g1428 474 MobiDBLite consensus disorder prediction 455 474 - -
Dere03g1428 474 Pfam NAF domain 309 367 IPR004041 GO:0007165
Dere03g1428 474 FunFam Non-specific serine/threonine protein kinase 3 307 - -
Dere03g1428 474 SMART serkin_6 10 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1428 474 FunFam Non-specific serine/threonine protein kinase 306 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1428 Dere-ChrDere03 23577392 23580106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1428 92 431 CBL-interacting serine-threonine protein kinases AT5G57630 62.099 2.15e-144 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Dere03g1428 Pkinase 7.1e-71 CL0016