Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1422 ATGGGACTTGAGAGAGGAGGCCTGAAGGGCTTACGTGGCGGGTGGAGCGTGGCCGCGAAGCCATGCGACTCCTGCAAATCGGCGGCTTCGGCGGTGTTCTGCCGAGCCGATTCCGCCTTCCTCTGCATGGCTTGCGATACCAGGATTCACTGCGCCAATAAGCTGGCTTCCCGCCACGACCGCGTGTGGATGTGCGAGGTGTGCGAGCAGGCCCCTGCTTCCGTCACGTGCAAGGCCGACGCTGCTGCTCTCTGCGTCACGTGCGACTCCGACATCCACTCGGCTAACCCGCTCGCCCGCCGCCACGAACGGGTCCCGGTGGAGCCCTTCTATGACTCCGCCGAGTCGGTGGTGAAATCCTCTGCTGCTGCTGCTGCTTTCAACTTCCTCGTTCCCAGCGATAATGGGATTTGCTCCGACGGCTTGCACCACGACGATCCCGAAACGGCGCCGTGGGGTTTCCCCAACCCGAATTTCAGCTCCAAACTCGAGGATGCTCCGGATGTCAAGTCCGGCGACATGTTCTTCTCGGAAATGGATCCGTTTTTGGATTTCGATTACTCCAATTCCTATCAGAACAATAATAATCACAGCGCGGGAAACGACAGCGTTGTGCCAGTTCAAAACAAACCTGCTCCGGCTCCGGTGATGAATCACTCCGAGAGTTGCTTCGATATTGATTTTTGCAGATCGAAGCTTTCTTCTTTTAGCTACCCGAGCCAAAGCGTTTCGTCGTCTTCGTTGGATGTTGGGGTTGTACCAGACTCGGTGTCAGAAATGTCGTTCTCTTTGGGGCGAAACATAAGCAACAGCTCGGAATCAATTGGAATCGGGTCATCGGGTAACAACCCGGCGACCCAACTGGGTGGCATGGATCGGGAAGCGAGGGTGTTAAGATACAGAGAGAAAAGGAAGAACCGCAAGTTCGAGAAAACCATTCGCTACGCTTCGAGGAAAGCATACGCGGAGACCCGGCCCAGAATTAAGGGCCGGTTCGCCAAACGGACCGAAACCGAATCGGACGTGGACCGGCTCTATAGCCCCGTCGGCACGGGGGCCCTAACGGTGAACGCTCAGTACGGCATCGTACCGACTTTTTAA 1101 0.5668 MGLERGGLKGLRGGWSVAAKPCDSCKSAASAVFCRADSAFLCMACDTRIHCANKLASRHDRVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDSAESVVKSSAAAAAFNFLVPSDNGICSDGLHHDDPETAPWGFPNPNFSSKLEDAPDVKSGDMFFSEMDPFLDFDYSNSYQNNNNHSAGNDSVVPVQNKPAPAPVMNHSESCFDIDFCRSKLSSFSYPSQSVSSSSLDVGVVPDSVSEMSFSLGRNISNSSESIGIGSSGNNPATQLGGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTETESDVDRLYSPVGTGALTVNAQYGIVPTF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1422 366 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Dere03g1422 366 CDD Bbox1_BBX-like 65 107 - -
Dere03g1422 366 Pfam CCT motif 293 335 IPR010402 GO:0005515
Dere03g1422 366 CDD Bbox1_BBX-like 21 64 - -
Dere03g1422 366 ProSiteProfiles CCT domain profile. 293 335 IPR010402 GO:0005515
Dere03g1422 366 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Dere03g1422 366 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Dere03g1422 366 SMART bboxneu5 65 107 IPR000315 GO:0008270
Dere03g1422 366 SMART bboxneu5 17 64 IPR000315 GO:0008270
Dere03g1422 366 MobiDBLite consensus disorder prediction 273 293 - -
Dere03g1422 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 358 IPR045281 GO:0009909
Dere03g1422 366 MobiDBLite consensus disorder prediction 273 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1422 Dere-ChrDere03 23360247 23361465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1422 1 366 C2C2-CO-like Transcription Factor Family AT5G57660 56.417 2.58e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dere03g1422 zf-B_box 4.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1422 03 23360247 23361465 Dere03g1422 03 23360247 23361465 ECH