Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1421 ATGATGCTTTCCTCTTCCCCTTCCAAGATACTAATAGGCCTCTCATTAGACCCAGATGATAGTAAAGAGCTTCTGTCATGGGCAATTAGAGTTCTAGCCCATCCAAATGACACCATTGTGGCCCTCCATGTTCTTGTTGCTGAGGATAAGAAGAAGAGGAAGCGTTCTTCAGTAATTAAAAGGCAATCTCAACTTCGGCAGGCTAAAGCCTATGTCATATCTGTGCTTGGTGAATTTGCAAGGAATTGCTGGTCTAAGCAGGTGAATTTGGAAGCCAAAGTGGCATTTAGTTCCAATGTAGGAAGAGGTTTAGTCGAAGAAGCCAAGTCCATATCTGCTGACGTTCTTCTTCTTCGTGGCTCAAGAAACCAATATAATAAGATTAAGGCCTCCAATGGAATTGCCAAGTATTGCTTTGAGAATGTTCACGAAAGCTGCACGGTAGTCTCTGTTGGGACAAATCCGAATTCCAAGTCTGCAAATTCCCAAGGTTCTTGTGAACCAAGCTCAAGGTGGTACAAGAAAAATAAGAAAAGTGACAGAGCAACGTCCCCTGTTTCAAAGGATTCTATCTCAGACTCTGACTCTAAGACTCAAACACGTTCACCAAGAACGGTATTGGACGCACTTGAGGGTCAATCTAACAGCACAGAAGATGATACCTTTAGCACAAGAGTCTCAAGCATCACAGATACTCCTTCAACGGCTTCTAAGATCAAAAGCCAATCCAAATTAAGGAAACCACAATCGCCATTCAGACTCATAGCCTCATTCCTTGCCTCACCGTTGAGAAGGAAGAACTCCAGCAAGTCCCAAAATGAAAAGACACAGCCATTGTTGAAGTGCCTCAGCTATGAGGTGATCTCCAACGCCACAAATGACTTCCACCAAGATAATTTGGTAGGACGGGGAGGGTACTCTGAAGTATACAGAGGAGATCTTTCTGATGGACAAAGCATTGCTGTGAAGAGGTTGTCTAGGGACAACAAGAGTGCTAACAAGGAAAAGGAGTTCCTCATGGAATTGGGAGTAATAGGACATGTGTGTCATCCTAATACTGCTACTTTAGTTGGATACTGCATTGAAAATGGACTCTACCTGATTTTCAAGTACTCCCAAAATGGAAACTTGGCAACTGCATTGCATGGTAAAGGAGGAAAGTCACTTGAATGGCTTGTGAGATACAAAATTGCGCTTGGAGTTGCAAGGGGCCTGCATTATCTTCACAAGTGTTGCAAACACCGGATAATTCATCGCGACATCAAAGCCTCCAATGTGCTTCTGGGTCCAGATTATGAACCACAGATTACTGATTTTGGGCTAGCGAAGTGGCTTCCAAACAAGTGGACTCACCATGCTATAATCCCAGTGGAAGGCACGTTCGGGTACTTGGCTCCAGAGTACTTCATGCATGGAATAGTGGATGAGAAAACAGATGTCTATGCATTTGGGATTCTTCTTCTGGAGATTATAACTGGTCGGAAGCCTGTTGATTCTTCAAAACAGAACCTTCTGCTATGGGCAAAGCCTCTGATGGAATCAGGGAAAATTGGGGAGCTCGCTGATCCAAGAATGGAAGGCGCATATGACGAAGAGCAATTGCAGAGGGTAGTTCTCGCGGCTTCATACTGTGTCAGACAATCACCCATCTGGCGTCCTGCAATGAGCGAGGTGTTGGAACTGCTAACCAGCGGGCAAGACTGTGAGGCAGGGAAGAGCTGGAGGATCCCGAAGTTCACTTCTGATGAACTGGATGATTACTCAATGGTGTTCGGATATGAAGTACCTTCGGACATATCACTTGAGGATTTTTTGTGA 1818 0.4461 MMLSSSPSKILIGLSLDPDDSKELLSWAIRVLAHPNDTIVALHVLVAEDKKKRKRSSVIKRQSQLRQAKAYVISVLGEFARNCWSKQVNLEAKVAFSSNVGRGLVEEAKSISADVLLLRGSRNQYNKIKASNGIAKYCFENVHESCTVVSVGTNPNSKSANSQGSCEPSSRWYKKNKKSDRATSPVSKDSISDSDSKTQTRSPRTVLDALEGQSNSTEDDTFSTRVSSITDTPSTASKIKSQSKLRKPQSPFRLIASFLASPLRRKNSSKSQNEKTQPLLKCLSYEVISNATNDFHQDNLVGRGGYSEVYRGDLSDGQSIAVKRLSRDNKSANKEKEFLMELGVIGHVCHPNTATLVGYCIENGLYLIFKYSQNGNLATALHGKGGKSLEWLVRYKIALGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAIIPVEGTFGYLAPEYFMHGIVDEKTDVYAFGILLLEIITGRKPVDSSKQNLLLWAKPLMESGKIGELADPRMEGAYDEEQLQRVVLAASYCVRQSPIWRPAMSEVLELLTSGQDCEAGKSWRIPKFTSDELDDYSMVFGYEVPSDISLEDFL 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1421 605 SMART serkin_6 295 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1421 605 MobiDBLite consensus disorder prediction 185 248 - -
Dere03g1421 605 Gene3D Phosphorylase Kinase; domain 1 256 371 - -
Dere03g1421 605 Gene3D Transferase(Phosphotransferase) domain 1 373 575 - -
Dere03g1421 605 Gene3D HUPs 2 150 IPR014729 -
Dere03g1421 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Dere03g1421 605 FunFam Putative receptor-like serine/threonine-protein kinase 262 371 - -
Dere03g1421 605 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 118 - -
Dere03g1421 605 SUPERFAMILY Protein kinase-like (PK-like) 270 562 IPR011009 -
Dere03g1421 605 PANTHER OS08G0249100 PROTEIN 51 575 IPR046958 -
Dere03g1421 605 Pfam Universal stress protein family 9 149 IPR006016 -
Dere03g1421 605 Coils Coil 322 342 - -
Dere03g1421 605 Pfam Protein kinase domain 295 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1421 605 ProSiteProfiles Protein kinase domain profile. 295 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1421 605 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Dere03g1421 605 MobiDBLite consensus disorder prediction 152 248 - -
Dere03g1421 605 MobiDBLite consensus disorder prediction 152 170 - -
Dere03g1421 605 CDD USP_Like 9 122 - -
Dere03g1421 605 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 372 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1421 Dere-ChrDere03 23337509 23340461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1421 283 601 Trihelix Transcription Factor Family AT1G70460 40.653 2.21e-73 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dere03g1421 Pkinase 2.1e-40 CL0016