Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1420 ATGGGATCCAACTTCAGTTGCTATGGCTCAGACAAGGTGGATGAAGTGCCATCATCATCACATGGTGTGGCTAACAATTCATGGAGAATATTCACATACAAGGAGTTGCATGCAGCCACTAATGGTTTCAGCGAGGATTGCAAACTTGGGGAAGGTGGGTTTGGGAGTGTCTACTGGGGAAGAACCAGTGATGGTCTCCAGATAGCAGTGAAGAAACTGAAAGCAATGAACTCAAAGGCAGAGATGGAATTCGCAGTAGAAGTAGAAGTTCTGGGAAGGGTAAGGCACAAGAATTTGCTTGGCCTAAGAGGGTACTGTGCAGGGGACGATCAACGCCTCATAGTGTACGATTACATGCCAAATCTCAGTCTTCTTTCTCATCTCCATGGCCAGTTTGGTAATGAAGTCCAGCTCGACTGGAAAAGAAGAATGAAGATCGCCATCGGCTCTGCTGAAGGCTTACTGTACTTGCATCACGAGGTTACACCCCACATCATCCACAGGGACATAAAGGCAAGCAATGTGCTCTTGAATTCAGAGTTTGAGCCTCTAGTTGCAGATTTTGGGTTCGCAAAGCTAATCCCAGAAGGAGTGAGCCACCTGACTACCCGTGTTAAGGGCACTTTGGGGTACTTGGCTCCTGAATACGCCATGTGGGGAAAGGTGTCCGAAAGCTGCGATGTTTACAGCTTTGGGATTCTTCTGTTAGAGCTTGTGACTGGAAGAAAGCCCATAGAAAAGCTGCCAGGTGGGGTCAAGAGAACTATTACTGAGTGGGCGGAGCCATTCATAAGGGCAGGCAAGTTCAGGGACATGGTGGATCCAAGGCTTAGAGGGAACTTCGATGAGAACCAAGTGAAGCAGATGATCAACGTGGCTGCTCTGTGCGTGCAAAGTGAGCCTGAGAAGCGACCCAACATGAAGCAAGTGGTTAACCTCTTGAAGGGATACGAAGCAGATCATGGAAGGGTGACGAAGATGAGGATTGACAGTGTCATATATAATGGACAGCTAATGGAGCTTGATCAAAATAGTGATGAAGAGGATCAAACCAATGGCGGGTATGGTGTTTTTAGTGCCCTTGAGGTGCAAAAGATGCATCATCTTCACAAGCGCTTTGATGAAACGAAGACGTACGGCTAA 1143 0.4751 MGSNFSCYGSDKVDEVPSSSHGVANNSWRIFTYKELHAATNGFSEDCKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGDDQRLIVYDYMPNLSLLSHLHGQFGNEVQLDWKRRMKIAIGSAEGLLYLHHEVTPHIIHRDIKASNVLLNSEFEPLVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGVKRTITEWAEPFIRAGKFRDMVDPRLRGNFDENQVKQMINVAALCVQSEPEKRPNMKQVVNLLKGYEADHGRVTKMRIDSVIYNGQLMELDQNSDEEDQTNGGYGVFSALEVQKMHHLHKRFDETKTYG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1420 380 PANTHER OS01G0253100 PROTEIN 24 319 - -
Dere03g1420 380 CDD STKc_IRAK 49 316 - -
Dere03g1420 380 Gene3D Phosphorylase Kinase; domain 1 14 118 - -
Dere03g1420 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Dere03g1420 380 FunFam PTI1-like tyrosine-protein kinase At3g15890 16 118 - -
Dere03g1420 380 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1420 380 Gene3D Transferase(Phosphotransferase) domain 1 119 335 - -
Dere03g1420 380 SUPERFAMILY Protein kinase-like (PK-like) 19 314 IPR011009 -
Dere03g1420 380 Pfam Protein tyrosine and serine/threonine kinase 47 314 IPR001245 GO:0004672|GO:0006468
Dere03g1420 380 FunFam PTI1-like tyrosine-protein kinase At3g15890 119 332 - -
Dere03g1420 380 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Dere03g1420 380 ProSiteProfiles Protein kinase domain profile. 43 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1420 Dere-ChrDere03 23331401 23334623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1420 31 341 Trihelix Transcription Factor Family AT1G70460 48.447 3.61e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Dere03g1420 PK_Tyr_Ser-Thr 1.7e-43 CL0016