Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1401 ATGCACAAACACAATTGCACTTTCAAGAGAGTTGCAAGTCACAGTATATATCCTTTTAGTGTATTTGCTCAGCAACCATTACAGAGTGAAATGGCCCTCAAAGTGAATGCAGCGTTTGTGATGGGGCTTGCCATCATAAGCCTCGTCTCAGTGGCATCTGCAATTTCTGGAACTGCCACCTTTTACACGCAATACGTTCCATCTGCATGCTATGGATACGAAGACCAGGGAACCATGATAGCAGCAGCGAGCGACGCAATCTGGGACAACGGAGCCGCATGCGGAAGAATGTATCAGATCACCTGCACCAGCGGCACCAACCAAGGCGTCGCTCAGCCTTGCAGGGGTGGCAGTGTCACCGTCAAGGTTGTGGATCGCTGCCCTTCCCCAGGATGCCAAGCCACCATCGATCTCTCTCAGGAAGCTTTCTCTGTCATCGCTGACCCTAATGAAGGAAAAATCAACATTGACTACACCCAGTAA 483 0.501 MHKHNCTFKRVASHSIYPFSVFAQQPLQSEMALKVNAAFVMGLAIISLVSVASAISGTATFYTQYVPSACYGYEDQGTMIAAASDAIWDNGAACGRMYQITCTSGTNQGVAQPCRGGSVTVKVVDRCPSPGCQATIDLSQEAFSVIADPNEGKINIDYTQ 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1401 160 CDD DPBB_EG45-like 55 159 - -
Dere03g1401 160 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 160 IPR007112 -
Dere03g1401 160 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 34 160 IPR044206 GO:0009627|GO:0048046
Dere03g1401 160 SMART dpbb_1 80 158 IPR007112 -
Dere03g1401 160 FunFam Barwin-related endoglucanase 54 160 - -
Dere03g1401 160 SUPERFAMILY Barwin-like endoglucanases 45 160 IPR036908 -
Dere03g1401 160 Pfam Lytic transglycolase 81 158 IPR009009 -
Dere03g1401 160 Gene3D - 47 160 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1401 Dere-ChrDere03 22897865 22899460 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1401 79 160 Expansin Gene Family AT2G45110 30.108 2.87e-08 49.7