Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1400 ATGCAACCGGTTGTTGTGGTGTCGTTGCCCACGCAGGCTCCTCATTCTTCAGCGAGGGTTGGTAAACCAGAATCTCCAAAATCAAGATCAAGATCCAACTTTGAAATGAAGGAGATCACTCCAAAGAAGCAAAAACGGTGCAATTGTAAACACTCAAAATGTCTAAAGCTATATTGTGAATGTTTTGCATCGGGAATATATTGTGATGGGTGCAACTGTGTGAACTGCCATAACAATGTTGAAAACGATGCCGCGAGACGAGAAGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCTAAAATTGCAAGCAGCCCTCATGGAACATGTGATAGCAGGGATGAGGCTGGTGAAGTTCTAATATTAGGAAAGCACAACAAGGGGTGCCATTGCAAAAAATCAGGATGCCTCAAGAAGTACTATGAGTGCTTCCAAGCCAACATTCTTTGCTCTGAAAATTGCAAATGCATGGACTGCAAAAATTTTGAAGGAAGCAGAAACCGAGACCAGAAAAACTGA 528 0.4261 MQPVVVVSLPTQAPHSSARVGKPESPKSRSRSNFEMKEITPKKQKRCNCKHSKCLKLYCECFASGIYCDGCNCVNCHNNVENDAARREAVEATLERNPNAFRPKIASSPHGTCDSRDEAGEVLILGKHNKGCHCKKSGCLKKYYECFQANILCSENCKCMDCKNFEGSRNRDQKN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1400 175 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 130 164 IPR005172 -
Dere03g1400 175 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 44 79 IPR005172 -
Dere03g1400 175 MobiDBLite consensus disorder prediction 1 34 - -
Dere03g1400 175 MobiDBLite consensus disorder prediction 1 15 - -
Dere03g1400 175 SMART CXC_2 42 82 IPR033467 -
Dere03g1400 175 SMART CXC_2 127 168 IPR033467 -
Dere03g1400 175 ProSiteProfiles CRC domain profile. 43 167 IPR005172 -
Dere03g1400 175 PANTHER TESMIN/TSO1-RELATED 3 170 IPR028307 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1400 Dere-ChrDere03 22853877 22854404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1400 23 171 CPP Transcription Factor Family AT4G29000 79.333 1.39e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Dere03g1400 TCR 2.5e-11 No_clan