Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1398 ATGTCAAAGAAGTACAAAATGAGTGAACATGGTTTTACTGTTTACCATCAGGTGCAAAAGACCCTTGGGACCAGCGATTCGGATTGCAAATGGAATGGAAGAGATGAGAAGAATGTGATCAGAAGGTTCCCTAGAAGTCAAACACCAGGACTTCCGTTTGATGAAATCATCGTAATTAAAACATTTTACCATGGATGGTACTTCTGATCAAAGTTAAGTAGTGCACCATTGTCTCCATCAAAGGGATCGCTTATATGCTACGCTGGAAAATCTGTATCTCAGTTCTTCGACCTCGGTTCGGTCTCGTTTCCCTGTGGAACCAGATGGGATGGGATCTGCAAACTGCATGATTCAACTCGAAAGTCGCAATCTTTGGTGAGTTCTCTAACTCTGCAAAAAATGGGCAGATTTAGAACTCTTCTACAAGTTAAAGGCGAAGCCTTTCTGCCTCCTTCAGAGCAACCACCATTTTTTCTTTCTCACCCAAACCTACCTTCTTCACCACCCAGTGTTGGATCCAATAATGTTTTCATCCATTTAAATGACAAGGTTAGTCCTAGTGTACTACTTATCATTATAATTCTGGCCATTGTTTTCTTCGTTTCTGGGTTGCTCCACCTCCTCCTTAGACTCATGTGGAGGCCTCAAAGCAGAGACCCAGATGACTTGGATAATGTGACTGCTCTTCAGGGCCAATTGCAGCAACTGTTCCTTCTCCACGATGCTGGGGTTGACCAGTCCTTCATAGACACCACCCTCCCTGTCTTCCATTACAAAGCCATCATAGGATTGAAGAACCCATTTGATTGCGCTGTGTGCTTGTGTGAATTTGAAGCTGAGGATAAGCTCAGATTGTTACCCAAATGCAGTCACGCCTTTCACATGGAGTGCATAGATACCTGGCTCTTGTCCCACTCTACTTGCCCTCTTTGTAGAGCTAGCTTGCTATCAGATTTCTCTCCTACCAACACTTCTTCTTCCCCATTCGTCTTCGTTCTCGAATCTGGGAGCGAGAGTTCTAGAGAGATTGTTCCAGAAAGAGAGAGTACAGTTGGTAGGACAAGTTCTGCGATTGGAGATAACGAACTTGGATCAACCCGTATAGATTTGTCACACAAATCAGGTGATTTAAGTTCAGATTACAATCCCGATCAGACTATGGTTGGGGAATCACTTGAGAAAGTGGTTACTGTTAAGCTGGGAAAGTTCAGGAATGTGGATTGTGGTGGTGAAGGAAGTAGTGCTGAAATTGCAGATGCTAGAAGGTGTTTTTCCATGGGGTCCTTTGCTTATGTTATGGACGACGATTCTTCACTTCAGGTACCAGTGAGAGCCACGATTAAGAAGCAGTCAAGTAAGAAACCCGCTTTACCTTTAACGCCTGGACGCAGGATTGCCATGTCAGAGTGTGACTGTGAGTCCACTAGAGATTTCAAATTCACAGGTTTTGATGCAACTATAGGTGCTGAAACTTCTGGGATTGGAAGTATTGAGAGAAGCAGAAAAGAGAGTTTTTCAATTTCAAAGATATGGCTCCGAGAAAAGAAAGAAAAGCCAAATGCAATGGCGGATTCGCCAAGAAGGGCTGTTTCGTTCCGATTCTCAACGCAGCGAAACGGGGTTGCATCAGATGATTCGAAGGCCAAGAACGGGAAATTTGACACGAGGACTGGGAAATCTGAGATGGATACAGGGAAATGGGAAAATGATGAGGAAAACCAGAGTTGTTATAGTGTGGATTCTCAGGGCAGAGCACCGTCTTTTGCGAGAAGGACTCTGCTTTGGCTTACTGGAAGACAGAACAAGGTTGTTCACTCATCCGTTGATTCCAACTTCTAG 1839 0.4415 MSKKYKMSEHGFTVYHQVQKTLGTSDSDCKWNGRDEKNVIRRFPRSQTPGLPFDEIIVIKTFYHGWYFXSKLSSAPLSPSKGSLICYAGKSVSQFFDLGSVSFPCGTRWDGICKLHDSTRKSQSLVSSLTLQKMGRFRTLLQVKGEAFLPPSEQPPFFLSHPNLPSSPPSVGSNNVFIHLNDKVSPSVLLIIIILAIVFFVSGLLHLLLRLMWRPQSRDPDDLDNVTALQGQLQQLFLLHDAGVDQSFIDTTLPVFHYKAIIGLKNPFDCAVCLCEFEAEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLSDFSPTNTSSSPFVFVLESGSESSREIVPERESTVGRTSSAIGDNELGSTRIDLSHKSGDLSSDYNPDQTMVGESLEKVVTVKLGKFRNVDCGGEGSSAEIADARRCFSMGSFAYVMDDDSSLQVPVRATIKKQSSKKPALPLTPGRRIAMSECDCESTRDFKFTGFDATIGAETSGIGSIERSRKESFSISKIWLREKKEKPNAMADSPRRAVSFRFSTQRNGVASDDSKAKNGKFDTRTGKSEMDTGKWENDEENQSCYSVDSQGRAPSFARRTLLWLTGRQNKVVHSSVDSNF 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1398 612 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 318 IPR013083 -
Dere03g1398 612 CDD RING-H2_EL5-like 269 312 - -
Dere03g1398 612 ProSiteProfiles Zinc finger RING-type profile. 270 312 IPR001841 -
Dere03g1398 612 Pfam Ring finger domain 269 312 IPR001841 -
Dere03g1398 612 MobiDBLite consensus disorder prediction 541 582 - -
Dere03g1398 612 MobiDBLite consensus disorder prediction 545 570 - -
Dere03g1398 612 FunFam RING-H2 finger protein ATL46-like 244 317 - -
Dere03g1398 612 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 181 511 - -
Dere03g1398 612 SMART ring_2 270 311 IPR001841 -
Dere03g1398 612 SUPERFAMILY RING/U-box 258 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1398 Dere-ChrDere03 22841084 22843979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1398 173 608 C3H Transcription Factor Family AT2G18650 48.796 1.66e-103 318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1398 03 22841084 22843979 Dere03g1398 03 22841084 22843979 ECH