Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1396 ATGCGAAATCCCAGCTCACTGAAGCAAGAATTTCTGCAAAAATGGATAAAGGGTCTTGGAAAATGTACGTCTCTGAAGAAGAACATGAACTTCTTGGAGAGGAAGAAGGCCATAAAAGTGTCAGCAGATTTAGCAATCGCTTCTACGAAAAATAAAAGCAGGCGTTGGAGCCGAGCTCTGATTGCCAATATTGCTTCGAGAGACCACAATAGCAAAGTCCTTACGGAGCACATAATAGGGTCCTTAGAGTGCCAGAGGCTCAGGAAGACTTTCACTTCATCATCTTCTTCGTCACTGCTGAGCAACAACAGAGGGATAATTGTCAGGAGCAAGAAGATCATGAAGAGAAGCCGTACACTTCGTAGAAGAGTAAAGAAAATGGTGATGGGGGATTCCATTGCAAAGAAGTTGATCCAGAAGAGAACAGGAATGCTTAAGAGGCTTGTTCCAGGGGGAGAGCTTATGGACGATGTGTCCTTGGTTGAAGAAACCCTAGATTATATTCAATCCCTCCGATCTCAAGTTCAAGTAATGCGATGTCTTCTCAGTTCTCACTACCTCCCAGCTCATTAA 573 0.438 MRNPSSLKQEFLQKWIKGLGKCTSLKKNMNFLERKKAIKVSADLAIASTKNKSRRWSRALIANIASRDHNSKVLTEHIIGSLECQRLRKTFTSSSSSSLLSNNRGIIVRSKKIMKRSRTLRRRVKKMVMGDSIAKKLIQKRTGMLKRLVPGGELMDDVSLVEETLDYIQSLRSQVQVMRCLLSSHYLPAH 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1396 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 186 IPR036638 GO:0046983
Dere03g1396 190 CDD bHLH_AtIBH1_like 135 182 IPR044549 GO:0006355
Dere03g1396 190 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 5 183 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1396 Dere-ChrDere03 22818879 22819451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1396 1 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30410 38.378 1.66e-28 103
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1396 03 22818879 22819451 Dere03g1396 03 22818879 22819451 ECH