Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1363 ATGGCGAAATTATCACAGCAAACCCGGAAGAACAATGCCACCAGCAATATTAACAACAATCTTGGCGTCACTAACAGTACTACTGTGCCCATCAAGGTGAAACGAACAAGGAGAAGCGTCCCTCGAGACTCTCCTCCTCAACGTAGCTCTATATACCGAGGAGTCACTAGGCACCGGTGGACCGGCCGGTATGAGGCTCATTTGTGGGACAAGAATTGCTGGAACGAGTCGCAAAACAAGAAAGGGCGACAAGGTGCTTACGACAATGAAGAAGCAGCAGCACATGCGTACGATCTAGCAGCTTTGAAATACTGGGGTCGAGATACAATCCTTAACTATCCGCTGTCAACCTACCAGAACGAACTGAAAGAAATGGAAGGTCAATCAAGGGAAGAGTATATTGGATCGTTAAGGAGGAAAAGCAGTGGTTTTTCCCGGGGAGTATCTAAATACAGAGGCGTTGCAAGACATCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTTTTCGGCAATAAATATCTTTATCTTGGGACATATGCAACCCAAGAAGAAGCTGCCACGGCTTATGATATGGCGGCTATAGAGTACCGTGGGCTCAACGCCGTCACGAATTTCGACCTCAGCCGTTATATAAAGTGGCTTAAGCCTAGTCTCAACATCAACAATGATATTTATAACACCATTAACACTAATCTCAGTGAATCTAATTATGGTAACACCCACTCAATTACAACAAACCCTAATCAAGAACAGAGGTTCAGCTTCTTCCACAACCCCCAGCTGGAATCGGTCAGCATGGATAATAGTGGAGAAGAAGCCACGCTGACTGATCAGCCACGCCCAGCAGCAACCACCACGTCAGCCCTAGGGCTTCTGCATCAGTCGTCCAAGTTCAAGGAAATGTTGGAGATGACGTCCGCCGCCAATCTGTCGGAGCCGGCGCCGGAGTCCGAGATGCGGCCACAGTGCAGGTTTCCGGATGACATTCAAACGTACTTTGAGTGTGAAGAATCCAACAGTAATGGGCAAGAGGATGATCACTTCATGTTCAGCGAGCTCAACTCCTTCGTGCCTCCTATGTTCCACTGTGATGATTTCGAGACATGA 1113 0.4762 MAKLSQQTRKNNATSNINNNLGVTNSTTVPIKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDNEEAAAHAYDLAALKYWGRDTILNYPLSTYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPSLNINNDIYNTINTNLSESNYGNTHSITTNPNQEQRFSFFHNPQLESVSMDNSGEEATLTDQPRPAATTTSALGLLHQSSKFKEMLEMTSAANLSEPAPESEMRPQCRFPDDIQTYFECEESNSNGQEDDHFMFSELNSFVPPMFHCDDFET 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1363 370 Gene3D AP2/ERF domain 51 116 IPR036955 GO:0003700|GO:0006355
Dere03g1363 370 Gene3D AP2/ERF domain 149 210 IPR036955 GO:0003700|GO:0006355
Dere03g1363 370 Pfam AP2 domain 149 200 IPR001471 GO:0003700|GO:0006355
Dere03g1363 370 Pfam AP2 domain 51 106 IPR001471 GO:0003700|GO:0006355
Dere03g1363 370 PRINTS Ethylene responsive element binding protein signature 190 210 IPR001471 GO:0003700|GO:0006355
Dere03g1363 370 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Dere03g1363 370 SUPERFAMILY DNA-binding domain 149 210 IPR016177 GO:0003677
Dere03g1363 370 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 280 - -
Dere03g1363 370 SMART rav1_2 51 120 IPR001471 GO:0003700|GO:0006355
Dere03g1363 370 SMART rav1_2 150 214 IPR001471 GO:0003700|GO:0006355
Dere03g1363 370 CDD AP2 149 210 IPR001471 GO:0003700|GO:0006355
Dere03g1363 370 ProSiteProfiles AP2/ERF domain profile. 51 114 IPR001471 GO:0003700|GO:0006355
Dere03g1363 370 SUPERFAMILY DNA-binding domain 50 116 IPR016177 GO:0003677
Dere03g1363 370 FunFam AP2-like ethylene-responsive transcription factor 149 210 - -
Dere03g1363 370 FunFam AP2-like ethylene-responsive transcription factor 50 116 - -
Dere03g1363 370 MobiDBLite consensus disorder prediction 1 30 - -
Dere03g1363 370 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1363 Dere-ChrDere03 22406277 22408916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1363 47 212 AP2-EREBP Transcription Factor Family AT5G57390 71.006 8.90e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere03g1363 AP2 3.1e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1363 03 22406277 22408916 Dere14g0035 14 428041 430548 CCT
Dere03g1363 03 22406277 22408916 Dere03g1363 03 22406277 22408916 ECH