Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1352 ATGGGTTTGTGTGGATTTTCCATGTCTGCATTTCTCTGTTTGTTCATTGTTCATTTTGGAGCTTATGGGGAAGAAAATGCGCAGCTTGTGAATGATAGAAACTCTCTGATATCATTCATGAGAGGCATTACTTCTGACCCAAAAAATGCTCTAGAGAGTTGGAAATCCCCTGGTCTTCATGTTTGTAAATGGTTGGGCATAAGATGCAACAATGCAAGTGACAGAGTCATAGAGATTGCTCTTAATGGGACGTCACTAGGAGGCACTATTTCCCCTGCTCTTTCCAATCTGTCTTCCTTGAAAATTCTTGATCTTTCTGAGAATTTTTTTGTGGGTCACATTCCTAAAGAATTAGGCCTCTTAGGTGAACTAGGACAACTCAGTTTATCTTGGAATCTTCTTAGAGGGGAAATTCCCACTGAATTGGGTTCACTTTATAACTTATACTACCTTGACATGGGAAGCAACCAGCTAGTGGGTGAGATTCCAGCATCACTTTTCTGCAATGGGTCTTCCTCATTGAGGTATATAGACCTCTCCAACAACTCCTTGGGGGGACAAATCCCATTGAACAATGAGTGTATGCTTCAAGAGCTTAGGTTCCTCTTACTTTGGTCTAATCAGCTTGTAGGCCAAGTACCTCTAGCTCTTTCTTACTCCACAAAACTTAGATGGCTCGATTTGGAGTCAAATATGCTGAGTGGAGAATTGCCATCTGAGATTGTACGTAATTGGTCACAATTGCAATTCCTTTACTTGTCAGATAATGACTTTGTAAGTCATGATGGTAACAGCAGCCTTGAACCTTTCTTTGCTTCCTTGACAAATTTATCTTACCTACAAGAACTTGAATTAGCAGGAAATAATCTTGGTGGGAAGCTTCCTCATATTATTGGTGATCTTCCTTCAAGCCTTGTACAGCTTCACCTAGATGACAATCTCATCTATGGCTCTATCCCTCCTCACATAGCCAACCTTGTTAACCTGACTCTCTTGAATTTTTCCAGTAATCTATTAAATGGATCAATCCCTCCTAGCCTATGCAAGATGGAAAAGCTTGAGAGAATCTATCTGTCCAATAATTCACTATCTGGTGAGATTCCTTCAGCACTTGGGGACATTCAGCATCTAGGTCTCCTAGATTTGTCAAGAAACAAGCTTTCTGGTTCTATACCAGATAGTTTTGCCAACCTTCCCCAGTTAAGAAGGCTTTTATTATATGAAAACCGGCTTTCTGGAACGATTCCACCAAGTCTGGGAAAATGCGTCAATTTGGAGATTCTAGACCTATCTAGCAACAGAATTTCTGGGGTGATTCCTACAGAAGTTGCAGCCTTGACTAGCTTGAAACTTTACTTGAACTTATCAAGAAATGACTTGAATGGCCCTTTACCATTGGAGCTGAGCAAAATGGACATGGTGCTAGCTATTGATCTATCTAACAACAATCTCTCTGGCAGAATCCCACCACAGCTTGAAAGCTGCATAGCGCTAGAATACCTTAATCTTTCTGGTAACTCCTTAGAGGGCCCTCTCCCTTCTTCATTAGGCCAATTGCCTTATATAAAGGCACTTGATGTGTCTTCCAACAGATTGACTGGGGAAATACCAGAGTCCCTTCAGTTATCTTCCACTCTCAAGAAACTCAATTTCTCCTTCAACAAGTTCTCAGGTACGGTGTCAAATAAAGGTGCATTTTCATTTCTGACTGTAGACTCTTTCCTAGGAAATGATGCTCTCTGTGGCTCCATAAAAGGCATGCCAAGCTGCCACAAGAAACACAGCTACCATTTGGTTCTCCTTCTAATTCCTGTGATTCTATTTGCCACTCCTCTCGTGTGCATGTTTGGCTATCGATTGGTGCACAAGGCGAAAGTTCAAAAGCCTTTATCTATAATTGGCAGAGATGACTTTGAGGATGAAGAGGGTACAAAAGAGCTAAAGTACCCACGAATTTCATATAAAAAGCTTATTGAAGCTACTGGAGGATTCAGTGCTTCAAGCTTAATTGGTTCAGGAAGATTTGGACATGTCTACAAGGGAGTCCTCAGAGATAACACCAGAATAGCAGTGAAGGTGTTAGATACTGCCACAGCAGGTGAGATTTCAGGGAGCTTTCGAAGAGAATTTCAAATTCTAAGAAGGACAAGGCACAGAAACTTGATAAGGATCATCACAATTTGCAGCAAGCCAGCGTTTAAGGCTCTTGTTCTTCCTCTAATGCCAAATGGTAGCCTTGAGAGGCACCTATATCCGAGCCATGGGATGAGCCAGAGGTTGGATTTGGTTCTAGTAGTGAGGATATGTAGTGATGTGGCTGAAGGAATGGCCTATTTGCACCATTACTCTCCAGTAAGAGTGGTCCACTGTGACCTCAAGCCTAGCAATATACTTCTTGATGATGATATGACAGCCTTGGTTACTGATTTCGGAATTGCAAGGCTTGTGAAAGGTGATGGGAGTATGGCCTCCAATAATAGCTCAGCATCTTTCAGTTCAACACATGGCTTGCTATGTGGTTCTGTTGGCTATATTGCCCCTGAGTATGGAATGGGAAAACAAGCATCGACCCAAGGCGATGTGTACAGTTTTGGAGTACTAGTGCTAGAAATAGTGACAGGAAGGCCTCCTACAGATGTGCTTGTCCATGAAGGCTCAAGCTTGCATGAGTGGGTGAAGAGACAGTACCCATACAAGCTTGACAACGTTGTTGAGAAGGCATTGCAGAGGTTGTCACCTTGTAGCCACCGTGCCAGAATCTGGCAAGATGTTGTACTGGAGCTCATAGAGCTGGGGCTTCTCTGCAGTCAGCATAATCCTCTCACAAGGCCAAGCATGCAGGATGTGGCTCAAGAGATGGGCAGGTTGAAGGACTACTTGTGTAATCCATCTTCTGTGATGATTGATGAAGCAGTCAACCCCAAGGTTGATGATTCTTTTTGTAGTGAGGATAATTTACTTGAGAAGTAG 2970 0.4256 MGLCGFSMSAFLCLFIVHFGAYGEENAQLVNDRNSLISFMRGITSDPKNALESWKSPGLHVCKWLGIRCNNASDRVIEIALNGTSLGGTISPALSNLSSLKILDLSENFFVGHIPKELGLLGELGQLSLSWNLLRGEIPTELGSLYNLYYLDMGSNQLVGEIPASLFCNGSSSLRYIDLSNNSLGGQIPLNNECMLQELRFLLLWSNQLVGQVPLALSYSTKLRWLDLESNMLSGELPSEIVRNWSQLQFLYLSDNDFVSHDGNSSLEPFFASLTNLSYLQELELAGNNLGGKLPHIIGDLPSSLVQLHLDDNLIYGSIPPHIANLVNLTLLNFSSNLLNGSIPPSLCKMEKLERIYLSNNSLSGEIPSALGDIQHLGLLDLSRNKLSGSIPDSFANLPQLRRLLLYENRLSGTIPPSLGKCVNLEILDLSSNRISGVIPTEVAALTSLKLYLNLSRNDLNGPLPLELSKMDMVLAIDLSNNNLSGRIPPQLESCIALEYLNLSGNSLEGPLPSSLGQLPYIKALDVSSNRLTGEIPESLQLSSTLKKLNFSFNKFSGTVSNKGAFSFLTVDSFLGNDALCGSIKGMPSCHKKHSYHLVLLLIPVILFATPLVCMFGYRLVHKAKVQKPLSIIGRDDFEDEEGTKELKYPRISYKKLIEATGGFSASSLIGSGRFGHVYKGVLRDNTRIAVKVLDTATAGEISGSFRREFQILRRTRHRNLIRIITICSKPAFKALVLPLMPNGSLERHLYPSHGMSQRLDLVLVVRICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDDDMTALVTDFGIARLVKGDGSMASNNSSASFSSTHGLLCGSVGYIAPEYGMGKQASTQGDVYSFGVLVLEIVTGRPPTDVLVHEGSSLHEWVKRQYPYKLDNVVEKALQRLSPCSHRARIWQDVVLELIELGLLCSQHNPLTRPSMQDVAQEMGRLKDYLCNPSSVMIDEAVNPKVDDSFCSEDNLLEK 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1352 989 SUPERFAMILY Protein kinase-like (PK-like) 648 951 IPR011009 -
Dere03g1352 989 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 201 596 - -
Dere03g1352 989 SUPERFAMILY L domain-like 273 574 - -
Dere03g1352 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Dere03g1352 989 FunFam Leucine-rich repeat family protein 31 193 - -
Dere03g1352 989 Gene3D Transferase(Phosphotransferase) domain 1 741 972 - -
Dere03g1352 989 CDD STKc_IRAK 670 956 - -
Dere03g1352 989 SMART serkin_6 664 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1352 989 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524
Dere03g1352 989 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 741 965 - -
Dere03g1352 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 190 - -
Dere03g1352 989 SMART LRR_typ_2 326 350 IPR003591 -
Dere03g1352 989 SMART LRR_typ_2 97 121 IPR003591 -
Dere03g1352 989 SMART LRR_typ_2 277 301 IPR003591 -
Dere03g1352 989 SMART LRR_typ_2 398 422 IPR003591 -
Dere03g1352 989 SMART LRR_typ_2 221 244 IPR003591 -
Dere03g1352 989 SMART LRR_typ_2 374 397 IPR003591 -
Dere03g1352 989 SMART LRR_typ_2 145 169 IPR003591 -
Dere03g1352 989 Gene3D Ribonuclease Inhibitor 194 263 IPR032675 -
Dere03g1352 989 Pfam Protein kinase domain 666 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1352 989 Pfam Leucine rich repeat 352 411 IPR001611 GO:0005515
Dere03g1352 989 ProSiteProfiles Protein kinase domain profile. 664 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1352 989 SUPERFAMILY RNI-like 79 349 - -
Dere03g1352 989 Pfam Leucine Rich Repeat 498 518 IPR001611 GO:0005515
Dere03g1352 989 Gene3D Ribonuclease Inhibitor 264 598 IPR032675 -
Dere03g1352 989 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Dere03g1352 989 Pfam Leucine Rich repeat 422 437 IPR001611 GO:0005515
Dere03g1352 989 Gene3D Ribonuclease Inhibitor 29 193 IPR032675 -
Dere03g1352 989 Gene3D Phosphorylase Kinase; domain 1 634 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1352 Dere-ChrDere03 22254330 22257905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1352 32 964 Receptor kinase-like Gene Family AT3G47570 34.597 4.63e-156 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere03g1352 Pkinase 4.3e-43 CL0016