Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1344 ATGAATAAGGAAAGAGTGGAAATTTTGTGTAGTATTAATTGCAGCGTTCTCATTTTTGTAAATGTACTCAGTGACTTGTTTGGCTCAAATTTGCCCAAGGATTGGGAAGTAGTAAATCAAATTTACAGATTTGTCTATTCAAGAAACTTGAATCTTCTTGGTGAAGATAGAAGGTGGCGACATCCTATCCTTCTGTTCCCTCGTAGTCACTTTTGCGCAGAGAACAGCTATAAATTTGAACACAACCTCAGTCATCCATACTTGCTCGGCCCTCATTCACCACCCCCCATGGAAGCTAGCACTGGACTTTTTGCAGGGTCGCATAACAGCAATGAGTTTGTGGTCATACAAGGACATGAAGAGCCTAAGCCTGTGAAGAACTTAGACGGTCAGCTCTGTGAGATATGTGGTGATTCAGTGGGGTGTACAGTGGACGGAGATTTGTTTGTGGCTTGTGAAGAGTGTGGCTTCCCTGTGTGCAGGCCATGCTACGAGTATGAAAGGAGGGAAGGAACTCAAGTTTGCCCTCAGTGCCAGACTAGATACAAGCGTATCAAAGGAAGCCCAAGAGTGGAGGGAGATGAAGATGAAGATGATGTGGATGACATTGAACATGAGTTCAAAATGGAAGAAGAAAAGAACAAGCTCAAGATAATCTATGGAGAAGATGATGAGAATGCTAAAACTCCACCAGTAGTAATAGCGAAGGTGAATGGGGAGATTCCCATACCTTCTTGTGGACTAGGAGAAGCCGGAAGTGCAAAGTTGGATGAAAATAAAGAGATAACAGATGACTGGAAGTTGCATCAAGGCAATCTGTGGCCTGAAACTGATGCCTCTGTTGATCCTGAAAAGGCCATGAGAGATGAAGCTAGACAGCCACTCTCAAGGAAAGTAGCAATTCCATCAGGCAGACTCAGTCCTTACAGAATGATGGTTGTGGCTCGGCTTCTGATTTTAGTATTATTCCTTCAGTACAGAATCTTGCACCCAGTGCCCGATGCAGTTGGACTCTGGCTTACAGCTGTAATATGTGAAATATGGCTTACGTTGTCATGGATTATTGATCAGCTTCCCAAATGGTTTCCCATTGATCGGGAGACGTACCTTGATCGGCTTTCACTCAGGTTTGAACCAGAGAACAAGCCAAATTTGTTTTCACCAGTCGATATGTTTGTCACTACTGTGGATCCAATCAAGGAACCTCCATTAGTTACAGCTAATACAGTTCTTTCAATCTTGGCCATGGATTACCCTGCTGATAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTCCAGGAAACTGCAGAATTTGCACGAAAATGGGTACCCTTCTGTAAAAAATATTCTATAGAGCCTCGAGCACCAGAGAAGTACTTCTCTGAGAAGATTGATTTTCTAAAGGATAAGGTCCAGTCTACTTACGTAAGAGACCGCCGTACTATGAAGAGAGAATATGAAGAATTCAAGGTCAGGATAAATGCACTTGTGGCTAAAGGCACGAGAGTTCCCCAAGAAGGGTGGACTATGCAAGATGGGACACCTTGGCCAGGAAACAATACCAATGATCATCCGGGTATGATACAAATTCTTCTTGGTCAGAATGGAGGCCTTCACGGAAATGAACTTCCCTGTCTTGTCTACCTTTCTCGTGAGAAAAGGCCTGGGTTTCAACATCACAGCAAAGCTGGTGCCTTGAATGCATTGCTTCGGGTATCTGCAGTGCTAAGCAATGCTCCTTTCGTGCTGAACTTGGATTGCAATCATTATGTGAATAATAGCAAAGCTGTCAGAGAGGCCATGTGTTTCTTCATGGATCTACAAGTTGGAAAGAGCATTTCCTTTGTCCAGTTTCCGCAAAGATTTGACAGCCTCGATAAGCATGATCGTTATGCCAACAGAAACACTGTTTTATTTAATATTAACATGAGATGCCTAGATGGAATCCAAGGACCTATTTATGTTGGTACAGGATGTATCTTCAGAAGAAAAGCTCTAAATGGCTGTGATTCTCCAAAGGCTCCAAAGCGGCCAAAAATGGTTGGCTGCGGCTGCTGTCCATGTTTTGGATCCCGCAAGAAGCTACAAGTGCACTCTAAGTATGATGGAAATGAAGATGATGCAAACATAGGAACAGATGAAGACAAGCAGCTTTTAATGTCACAGATGAATTTTGAAAATAAATTTGGAAAGTCTGCAGTTTTTGTGAACTCTTCCATAACAGAAGAGGGTGGTATTCCTTCTTCGTCTAATCAGGCAGCCCTGCTTAAAGAAGCCATTCATGTCATGAGTAGTAGCTATGAAGACAAAACCCTTTGGGGATATGAGGTTGGTTGGAACTATGGATCTATATCAGCAGATATTCTAACGAGTTTTAAGATGCACTGTCGTGGTTGGAGATCTGTATACTGCATGCCGGAGAGACCTGCATTCAGGGGTACTGCTCCTATCAACCTTTCAGATCGACTTAGCCAAGTGCTTAGATGGGCAGTGGGATCACTTGAGATCCTTTTCAGCCGCCACTGCCCAATATGGTACAGCTTAAGGGAAGGAAAACTTAAGGGGCTTCAGAGAGTTGCCTATATCAGCAGCACTGTTTACCCCTTCAGCTCAATACCCATCCTAATATATTGTCTCCTTCCTGCCATCTGCTTGCTCACAGACAAATTCATCACACCATCGATAAGCACTTTTGCAAGTCTCCTCTTTGTTGCACTGTTCATCTCTATCTTTGCATCAAGTATTCTTGAGTTGAGATGGAGTGGAGTTAGCATTGAGGAATATTGGAGAAATGAGCAATTCTGGGTTATTGGCAGCGTGTCAGCACACCTCTTTGCAATTGTGAGAGGCCTTCTAAAGGCTGTGGCTAAAGTTGATATAAACTTCAGTGTCGTATCAAAGGTACCAGATGAAGGGGAGTTCCATGATCTGTACACCTTTAGATGGACTGCACTCCTAATACCTCCAACCACTGTCATAATCATTAACCTTGTTGGCATTGTAGCTGGGTTTACAGACACTATAAACAGCGGTGAACATTCTTGGGGAGCACTACTTGGGAAGCTCTTCTTCTCCTTCTGGGTTCTGGTCCATCTCTACCCATTCCTTAAAGGTCTGATGGGTCGGCAGAACCGAACACCAACTCTTGTTATCATATGGTCAGTGCTTTTGGCTTCCATCTTCTCCTTGCTTTGGAATTTAGATGTTAACTTACTTTATCAACAACACACTTCTCAGGAGGAGGGTCAAATGGTGAAAGTCAAGACCATATTGTTGAAATCAAAGATTATGAACCCCAAAGGTCAGAAGCCACTTCCATCCTTCAGAGCTTAA 3357 0.4328 MNKERVEILCSINCSVLIFVNVLSDLFGSNLPKDWEVVNQIYRFVYSRNLNLLGEDRRWRHPILLFPRSHFCAENSYKFEHNLSHPYLLGPHSPPPMEASTGLFAGSHNSNEFVVIQGHEEPKPVKNLDGQLCEICGDSVGCTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCQTRYKRIKGSPRVEGDEDEDDVDDIEHEFKMEEEKNKLKIIYGEDDENAKTPPVVIAKVNGEIPIPSCGLGEAGSAKLDENKEITDDWKLHQGNLWPETDASVDPEKAMRDEARQPLSRKVAIPSGRLSPYRMMVVARLLILVLFLQYRILHPVPDAVGLWLTAVICEIWLTLSWIIDQLPKWFPIDRETYLDRLSLRFEPENKPNLFSPVDMFVTTVDPIKEPPLVTANTVLSILAMDYPADKISCYVSDDGASMLTFEALQETAEFARKWVPFCKKYSIEPRAPEKYFSEKIDFLKDKVQSTYVRDRRTMKREYEEFKVRINALVAKGTRVPQEGWTMQDGTPWPGNNTNDHPGMIQILLGQNGGLHGNELPCLVYLSREKRPGFQHHSKAGALNALLRVSAVLSNAPFVLNLDCNHYVNNSKAVREAMCFFMDLQVGKSISFVQFPQRFDSLDKHDRYANRNTVLFNINMRCLDGIQGPIYVGTGCIFRRKALNGCDSPKAPKRPKMVGCGCCPCFGSRKKLQVHSKYDGNEDDANIGTDEDKQLLMSQMNFENKFGKSAVFVNSSITEEGGIPSSSNQAALLKEAIHVMSSSYEDKTLWGYEVGWNYGSISADILTSFKMHCRGWRSVYCMPERPAFRGTAPINLSDRLSQVLRWAVGSLEILFSRHCPIWYSLREGKLKGLQRVAYISSTVYPFSSIPILIYCLLPAICLLTDKFITPSISTFASLLFVALFISIFASSILELRWSGVSIEEYWRNEQFWVIGSVSAHLFAIVRGLLKAVAKVDINFSVVSKVPDEGEFHDLYTFRWTALLIPPTTVIIINLVGIVAGFTDTINSGEHSWGALLGKLFFSFWVLVHLYPFLKGLMGRQNRTPTLVIIWSVLLASIFSLLWNLDVNLLYQQHTSQEEGQMVKVKTILLKSKIMNPKGQKPLPSFRA 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1344 1118 FunFam Cellulose synthase 115 206 - -
Dere03g1344 1118 Coils Coil 487 507 - -
Dere03g1344 1118 Pfam Cellulose synthase 389 1076 IPR005150 GO:0016020|GO:0016760|GO:0030244
Dere03g1344 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 206 IPR013083 -
Dere03g1344 1118 SUPERFAMILY Nucleotide-diphospho-sugar transferases 402 917 IPR029044 -
Dere03g1344 1118 Pfam Zinc-binding RING-finger 123 200 IPR027934 -
Dere03g1344 1118 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 546 679 IPR029044 -
Dere03g1344 1118 ProSiteProfiles Zinc finger RING-type profile. 133 179 IPR001841 -
Dere03g1344 1118 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 292 1062 - -
Dere03g1344 1118 CDD mRING-HC-C4C4_CesA 131 181 - -
Dere03g1344 1118 SUPERFAMILY RING/U-box 117 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1344 Dere-ChrDere03 22090900 22099067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1344 97 1073 Cell Wall Biosynthesis AT5G17420 69.041 0.0 1457