Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1343 ATGGAAGCCAGTGCTGGACTCGTCGCTGGGTCTCACAACCGCAACGAGCTCGTCGTCATTCACGGCCACGAAGAGCCAAAGCCTCTGAAGAACTTGGACGGTCAGGTGTGTGAGATATGCGGCGACGATATCGGACTGACGGTGGACGGAGACTTGTTCGTTGCCTGCAATGAGTGTGGTTTTCCGGTGTGCCGTCCCTGCTATGAATATGAAAGGAGAGAAGGCAGCCAACTGTGCCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGAAGCCCGAGGGTGGAGGGAGATGATGATGAGGAGGACGTGGATGATATTGAACATGAATTCAACATTGAAGACGAGAAGAACAAGCATAACCATCTCGCAGAGGCCATGCTGCATGGGAAGATGAGCTATGGAAGAGGCCCTGAAGATGAAGAGAATGCACAATTCCCACCTGTTATTGCCGGTAATCGTTCCCGCCAGGTGAGTGGGGAATTCCCAATAGCACCTCATGGGTATGGAGAACAGATGCTAGCTTCTTCACTGCATAAACGCGTTCATCCTTATCCAGTATCTGAACCTGGAAGTGCAAGATGGGATGAGAAGAACGAGGATGGATGGAAAGACAGAATGGATGACTGGAAACTGCAGCAAGGCAATCTGGGGCCTGAACCTGATGAAGATCCAGATGCAGCCATGTTGGATGAAGCGAGGCAGCCATTGTCAAGGAAAGTGCCAATAGCATCGAGCAAGATAAATCCATATAGAATGGTGATTGTGGCTCGGCTTGTGATTCTTGCCTTCTTCCTCCGATATAGAATATTGAACCCAGTTCATGACGCCATTGGGCTATGGCTAACCTCTATTATATGCGAAATTTGGTTCGCATTTTCGTGGATCCTTGATCAGTTTCCTAAGTGGTTTCCCATTGATCGAGAGACTTACCTCGATCGTCTTTCTATCAGATACGAACGAGAAGGAGAACCCAACATGCTTGCACCTGTGGATGTGTTTGTGAGTACAGTGGATCCCATGAAGGAGCCTCCTTTGGTGACAGCAAACACCATTCTTTCAATCCTGGCCATGGATTACCCAATCGATAAAATATCATGCTATATCTCCGACGATGGAGCTTCAATGTGTACCTTCGAAGCCCTTTCAGAAACTGCAGAATTTGCGAGGAAGTGGGTTCCTTTCTGCAAGAAATTCTGCATTGAACCTCGAGCACCAGAGATGTACTTCTCAGAGAAGATCGATTACTTGAAAGATAAAGTGCAGCCCACCTTCGTCAAGGAGCGACGTGCAATGAAGAGAGAGTACGAAGAATTTAAGGTGAGAGTGAATGCACTAGTGGCAAAAGCCCAGAAGGTTCCACCAGGAGGCTGGATTATGCAGGATGGGACGCCATGGCCAGGGAACAACACTAAGGACCATCCTGGTATGATTCAAGTGTTTCTTGGTCACAGTGGAGGCTGTGACACTGAAGGAAACCTCCTTCCTCGTCTTGTCTACGTCTCTCGAGAGAAAAGGCCTGGTTTTCAACACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTCTCTGCTGTGCTTACAAATGCTCCATTCATGCTGAACTTGGATTGTGATCACTATGTCAATAACAGCAAGGCCGTCCGAGAGGCCATGTGCTTCTTGATGGACCCTCAAACAGGAAAGAAAGTCTGCTACGTCCAGTTTCCTCAAAGATTCGATGGCATTGACAGGCACGATCGTTATGCCAATAGGAACACAGTTTTCTTCGATATTAACATGAAGGGTCTAGACGGTATTCAGGGTCCCGTATATGTGGGGACAGGGTGTGTCTTCAGGAGGCAAGCTTTATACGGATACAATCCTCCCAAGGAACCTAGACGCCCCAAAATGGTAAGCTGTGATTGCTGCCCATGCTTTGGACGCCGCAAGAAGCACAAGTATGCAAAGGATGGTGCAAATGGAGAGTCTGCAATGCTACAACAAGGAATGGAGGATGATAAAGAGTTGCTGATGTCTCAGATGAATTTTGAACAGAAATTTGGGCAATCATCTATTTTTGTGACTTCCACTCTGATGGAAGAAGGTGGTGTGCCTCCTTCCTCAAGCCCAGCAGCCCTGCTTAAAGAAGCAATTCATGTGATAAGCTGTGGCTATGAGGATAAAACTGAATGGGGAACTGAGCTGGGTTGGATCTATGGGTCTATTACTGAGGATATCCTAACAGGTTTCAAGATGCATTGCCGTGGTTGGAGGTCTATTTATTGTATGCCAAAGAGACCTGCCTTCAAGGGTACAGCTCCTATCAACTTGTCTGATAGGCTCAACCAGGTGCTTCGTTGGGCACTTGGATCCATTGAGATCTTCTTCAGTCACCATTGCCCTGCATGGTATGGCTACAAGGGAGGGAATAAGCTCAAGTGGCTTGAGCGATTCGCCTATGTGAACACTACAGTCTACCCCTTCACCTCCATTCCTCTACTTGCCTACTGTATTCTTCCTGCCATTTGCCTACTCACTGACAAGTTCATCATGCCACCGATAAGCACTTTTGCCGGTTTGTACTTTGTTGCTTTGTTCTCTTCTATCATTGCAACGGGCATCCTTGAGTTGAAATGGAGTGGAGTAAGCATAGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTATTTGCTGTCATCCAAGGTCTTCTAAAGGTCCTAGCTGGAATAGATACCAACTTCACTGTTACATCCAAGGCATCGGATGATGAGGAATTTGGAGAATTATACACCTTCAAATGGACCACTCTCCTAATTCCCCCAACCACTATACTAATCATCAATATTGTTGGTGTTGTTGCTGGAATCTCTGATGCCATCAACAATGGGTACCAATCCTGGGGACCCCTATTTGGAAAGCTCTTCTTTTCTTTTTGGGTCATTGTTCATCTCTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGAACACCCACCATTGTTGTGATTTGGTCAGTGCTCTTGGCTTCTATTTTCTCTCTACTGTGGGTGAGAATTGACCCATTTGTGATGAAAACTAAGGGGCCTGATACCAAGATGTGTGGAATCAACTGCTGA 3126 0.4696 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDDIGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEDEKNKHNHLAEAMLHGKMSYGRGPEDEENAQFPPVIAGNRSRQVSGEFPIAPHGYGEQMLASSLHKRVHPYPVSEPGSARWDEKNEDGWKDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDAIGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTILSILAMDYPIDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFCIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGCDTEGNLLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKEPRRPKMVSCDCCPCFGRRKKHKYAKDGANGESAMLQQGMEDDKELLMSQMNFEQKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPAWYGYKGGNKLKWLERFAYVNTTVYPFTSIPLLAYCILPAICLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKASDDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKMCGINC 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1343 1041 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Dere03g1343 1041 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 489 622 IPR029044 -
Dere03g1343 1041 FunFam Cellulose synthase 19 110 - -
Dere03g1343 1041 SUPERFAMILY Nucleotide-diphospho-sugar transferases 344 823 IPR029044 -
Dere03g1343 1041 Pfam Cellulose synthase 331 1035 IPR005150 GO:0016020|GO:0016760|GO:0030244
Dere03g1343 1041 Coils Coil 429 449 - -
Dere03g1343 1041 CDD mRING-HC-C4C4_CesA 35 85 - -
Dere03g1343 1041 FunFam Cellulose synthase 448 622 - -
Dere03g1343 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Dere03g1343 1041 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Dere03g1343 1041 SUPERFAMILY RING/U-box 21 107 - -
Dere03g1343 1041 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 234 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1343 Dere-ChrDere03 22083541 22090782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1343 1 1041 Cell Wall Biosynthesis AT5G17420 86.084 0.0 1847
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1343 03 22083541 22090782 Dere03g1343 03 22083541 22090782 ECH