Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere03g1342 | ATGCAGCAAGGTGATCAGACGCCGCTGAGCTTGAGGCCTGGTGGTGGTCGAGGCGGCAGTGGCGGAAGCAGGCTGTTCGGTGCTCGATACGACTCCTCATCATCGACATCTTCTCCTTCCCCCGCTTTTGGATCCTTTTCCGCTGATCTCCCACTCTTGCGCCCCCATGGCGGTGCTCCCTCGCCATTCTCCATAAAGGCTGGTGATTCACGGTTCGAGGGTCGTGAGCGGGTGCGATACACCAGAGATCAGCTGTTACAGCTCAGAGAGGCTGTTGAGGTCCCTGATGATATTCTAAAAATCAAACAAGATATAGAAGCTGAACTTTTTGGTGAAGATCAAAGCTGGGGTCGTGCAGAAAGCAACCCCCCACATCAATTTCAAAATCGATATTCGGAGCCAGATAACCGTGACTGGCGTGGCCGCTCTGGACAACTTCCTCCTGCAGAAGAAAGGTCTTGGGAACATATTAGGGAGAATAGAGAATTTGGTAAACAGCAGGATTCCAGCCAGATTAATCGCCATGACCAACAGAATGTGCAGTTCCCAAAGGGAGGCCCTGCTCCTACTCTAGTGAAGGCTGAAGTGCCATGGTCGGCTAGAAGGGGAAGTCTCTCTGACAAGGATCGTGTCTGGAAGACTGTGAAAGGGATTCTAAATAAGTTGACTCCTGAGAAATTTGATCTCCTGAAGGGTCAATTGATTGATGCGGGCATTACATCAGCTGACATCTTGAAGGGTGTCATTTCGCTCGTATTTGACAAGGCTGTGCTTGAACCAACATTTTGTCCCATGTATGCTCTTCTGTGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGAAGAACCTGGTGGGAAAGAAATCACTTTTAAGCGAGTACTCTTAAATAACTGCCAGGAGGCTTTTGAAGGTGCAGATAAATTGAGGGAAGAAGTCAGGCAGATGACTGCCCCAGAGCAGGAGATGGAGCGTCGTGACAAGGAAAGATTGGTCAAGCTTCGTACCCTTGGAAATATCCGATTAATTGGGGAACTTTTAAAGCAGAAGATGGTCCCTGAAAAAATTGTCCATCACATTGTTCAGGAGCTTTTAGGACCACCTGATGGCAAGTCCTGTCCTGTTGAGGAAAATGTTGAGGCTATATGTCAGTTTTTCAACACCATTGGCAAGCAGCTTGATGAAAGCCCAAAATCACGGCGTGTAAATGATGTGTACTTTAGCCGATTGAAAGAATTGAGCGCAAACCCCCAACTTGCACCACGGTTGAGGTTCATGATTCGTGATGTTCTGGATTTGCGTTCAAATAACTGGGTTCCAAGGCGTGAAGAGGTAAAAGCCAAAACCATCACTGAAATTCATTCTGAGGCTGAAAAAAATCTTGGATTGCGTCCAGGTGCCACTGCAAGCATTAGAAATGCACGTGGTCAAGGAAATGCCAGCCCTGGGGGATTTCCCATTGCTCGACCTGGTACCGGGGGTATGATGCCTGGAATGCCAGGGACCAGGAAGATGCCTGGGATGCCTGGAATTGATAATGACAATTGGGAGATGCCGAGGAATTGGTCAATGCCTCGGGGAGAGATGACAGCTGTGCAACATGGTGGACGTGGCCAGCCTCCTTTGCTTTCCAAGTCAGCAAACCTGAGCTCAAAGTTGCTACCTCAAGGTAGTGGTGGTCTTATAAGTGGAAGAAGTAGTGCCCTAGTGCATGGGGGTGGTGGTGCTCCTCCCACTCGCTCATCAAACTTTGGTTTAGATACTGAGCCTGCACCTAAAGTTCCTGCAGCCTTCTCTGAGAAGCCACTGGCTCCAGCACCAAAAATCAATACTGAAGATCTTCATCGCAAAACTGTCTCTCTTCTAGAAGAATATTTTAGTGTTCGGCTTTTGGAAGAGGCATTACAGTGTGTGGAAGAACTAAAAGCTCCAGCTTATCACTCTGAGTTTGTCAAGGAAGCCATTTCCCTTGCACTTGATAAAAGTCCACCTTGTGTTGAACCCGTTGCCAATCTCCTTGATTATCTCTTCATTAAGAAGATTCTTACGGCTAGAGACATAGGCACAGGGTGTTTGTTATTTGCTTCTATGCTTGATGATGTTGGCATAGATCTACCAAAAGCTCCAAACAATTTTGGGCAGATAATTGGGAAACTAGTTTTGGCTGAGGGGTTGGATTTTAAGGTGGTCAGAGAGATCCTTAAGAAGGTGGAAGATGACCTGTTCCAGAAAGCGATATTTGATGCTGCAGTACGGGTCATTAGTTCTTCATCTGGGCAAGCGATTTTGGCATCACAAGCATCTGAAATTGAGGCCTGCCGGAGTTTGTTCAAGTGA | 2340 | 0.4735 | MQQGDQTPLSLRPGGGRGGSGGSRLFGARYDSSSSTSSPSPAFGSFSADLPLLRPHGGAPSPFSIKAGDSRFEGRERVRYTRDQLLQLREAVEVPDDILKIKQDIEAELFGEDQSWGRAESNPPHQFQNRYSEPDNRDWRGRSGQLPPAEERSWEHIRENREFGKQQDSSQINRHDQQNVQFPKGGPAPTLVKAEVPWSARRGSLSDKDRVWKTVKGILNKLTPEKFDLLKGQLIDAGITSADILKGVISLVFDKAVLEPTFCPMYALLCSDLNEKLPPFPSEEPGGKEITFKRVLLNNCQEAFEGADKLREEVRQMTAPEQEMERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDGKSCPVEENVEAICQFFNTIGKQLDESPKSRRVNDVYFSRLKELSANPQLAPRLRFMIRDVLDLRSNNWVPRREEVKAKTITEIHSEAEKNLGLRPGATASIRNARGQGNASPGGFPIARPGTGGMMPGMPGTRKMPGMPGIDNDNWEMPRNWSMPRGEMTAVQHGGRGQPPLLSKSANLSSKLLPQGSGGLISGRSSALVHGGGGAPPTRSSNFGLDTEPAPKVPAAFSEKPLAPAPKINTEDLHRKTVSLLEEYFSVRLLEEALQCVEELKAPAYHSEFVKEAISLALDKSPPCVEPVANLLDYLFIKKILTARDIGTGCLLFASMLDDVGIDLPKAPNNFGQIIGKLVLAEGLDFKVVREILKKVEDDLFQKAIFDAAVRVISSSSGQAILASQASEIEACRSLFK | 779 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere03g1342 | 779 | MobiDBLite | consensus disorder prediction | 555 | 588 | - | - | |
| Dere03g1342 | 779 | Pfam | MIF4G domain | 213 | 438 | IPR003890 | GO:0003723|GO:0005515 | |
| Dere03g1342 | 779 | MobiDBLite | consensus disorder prediction | 170 | 184 | - | - | |
| Dere03g1342 | 779 | MobiDBLite | consensus disorder prediction | 112 | 191 | - | - | |
| Dere03g1342 | 779 | SMART | ma3_7 | 615 | 727 | IPR003891 | - | |
| Dere03g1342 | 779 | SUPERFAMILY | ARM repeat | 608 | 757 | IPR016024 | - | |
| Dere03g1342 | 779 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
| Dere03g1342 | 779 | MobiDBLite | consensus disorder prediction | 27 | 44 | - | - | |
| Dere03g1342 | 779 | ProSiteProfiles | MI domain profile. | 614 | 736 | IPR003891 | - | |
| Dere03g1342 | 779 | Pfam | MA3 domain | 616 | 727 | IPR003891 | - | |
| Dere03g1342 | 779 | SUPERFAMILY | ARM repeat | 206 | 441 | IPR016024 | - | |
| Dere03g1342 | 779 | FunFam | Eukaryotic translation initiation factor isoform 4G-2 | 608 | 769 | - | - | |
| Dere03g1342 | 779 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 60 | 764 | IPR045208 | GO:0003743 | |
| Dere03g1342 | 779 | SMART | if4_15 | 212 | 438 | IPR003890 | GO:0003723|GO:0005515 | |
| Dere03g1342 | 779 | MobiDBLite | consensus disorder prediction | 149 | 169 | - | - | |
| Dere03g1342 | 779 | FunFam | Eukaryotic translation initiation factor isoform 4G-2 | 203 | 439 | - | - | |
| Dere03g1342 | 779 | Gene3D | - | 607 | 774 | - | - | |
| Dere03g1342 | 779 | Gene3D | - | 204 | 439 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere03g1342 | Dere-ChrDere03 | 22056778 | 22063906 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere03g1342 | 1 | 777 | Eukaryotic Initiation Factors Gene Family | AT5G57870 | 64.313 | 0.0 | 956 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere03g1342 | 03 | 22056778 | 22063906 | Dere03g1342 | 03 | 22056778 | 22063906 | ECH |