Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere03g1337 | ATGGAGTTTAAGTTTCGGGCTGAGGATCACAAGCCACCATGCTATCAATTCCCTTCTTCAAGACAAAGCTACTTCTCGGATCACCCCTTGTTGCGAGGTTTTCCCAGCGTCACTTCATTACCAAACATTGGCCAGATGCCAACCCTAAACGGTGGCGAGGAAGGTATACTGTGGCTACTCGAGAAAGAGCAAATCCGGCGGGAGATTATCTCCGGTGTGATTGCCAGGAGGCGAATGCTGGAAGATGAAGTGAGAAGGGAGCTGATGGTGGAGAGAGAGCTGGCATTGCGAAGGAATTTGGGAGAAAGTTTCTTGTTTGATGAGCGATTAGCAGTGGAGTTGAATCCCAGACTCAATGGGATTGATAATCGGCCACTTGAGGAGCGAACTGCATTTCCCAATAGCAGGGAATTTAATAGCTTGCTAACCATGCCCCGATCTCCACAACCGATGGCCTCTGAACCAGCTCCCGAGAATAACAAAAATAAATTCATCATACTGGCTAAACCAGACCCAGCTCTTTATATAGCAAAGCGGAAAGCTGTAACACCACCTGCTGTTGGTAATGAGCCTTCTCCATCTGATTCGAAGAAAAAACCCAAGGTGGACTTTCGTTGTGCTCTATGTCAGGTTAGTGTGACAAGTGAGACAGGCTTGAACGAACACCTTCAGGGTAAGAAGCATAAGGCCAAGGAATCAGCACTGAGAATGCGGAAGATTGGGTTGGATGCAAAAGCAGATGAGTGGTCACGTGACTCATGTCAAGCTCAATCTAAAGTAACCAGGGAAGGCATAAATCAGACAGTGGTAGGTGAAGATCAAGCAGAAATCAAAACTAAAGAGGAGGAGGGGCTTGTGCAGAAAAATCAGAATACAGAAGATTCAAAGAAGCAAAATGGGACTGAAACAGAGCAAGTAGGAAAATCAGATGCAGTGGACAAGAAAAGAAAATTCAAGGTTTGGTGTGAGGTCTGCCAAGTAGGATCTTTCTCTCAAATCGTGATGGAGAGCCATAAAAAGGGGAAAAAACATATGAATCGATTGAAGAAATTATGTCAGAATGATGGGAGTGCCCCTCTCACATCTACTGTATCATCAGAAGCTACTTCGTTGACAAAAGATACAGATACTGCTAACTTAGACTTGATGACAAGTAGTGATAGTGTGGTGGGTGAAGAACACTGA | 1185 | 0.4498 | MEFKFRAEDHKPPCYQFPSSRQSYFSDHPLLRGFPSVTSLPNIGQMPTLNGGEEGILWLLEKEQIRREIISGVIARRRMLEDEVRRELMVERELALRRNLGESFLFDERLAVELNPRLNGIDNRPLEERTAFPNSREFNSLLTMPRSPQPMASEPAPENNKNKFIILAKPDPALYIAKRKAVTPPAVGNEPSPSDSKKKPKVDFRCALCQVSVTSETGLNEHLQGKKHKAKESALRMRKIGLDAKADEWSRDSCQAQSKVTREGINQTVVGEDQAEIKTKEEEGLVQKNQNTEDSKKQNGTETEQVGKSDAVDKKRKFKVWCEVCQVGSFSQIVMESHKKGKKHMNRLKKLCQNDGSAPLTSTVSSEATSLTKDTDTANLDLMTSSDSVVGEEH | 394 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere03g1337 | 394 | Gene3D | Classic Zinc Finger | 191 | 243 | - | - | |
| Dere03g1337 | 394 | MobiDBLite | consensus disorder prediction | 271 | 310 | - | - | |
| Dere03g1337 | 394 | PANTHER | OS06G0651300 PROTEIN-RELATED | 1 | 355 | - | - | |
| Dere03g1337 | 394 | MobiDBLite | consensus disorder prediction | 274 | 310 | - | - | |
| Dere03g1337 | 394 | SMART | ZnF_U1_5 | 201 | 235 | IPR003604 | GO:0003676|GO:0008270 | |
| Dere03g1337 | 394 | SMART | ZnF_U1_5 | 317 | 351 | IPR003604 | GO:0003676|GO:0008270 | |
| Dere03g1337 | 394 | MobiDBLite | consensus disorder prediction | 355 | 386 | - | - | |
| Dere03g1337 | 394 | Pfam | Zinc-finger of C2H2 type | 204 | 228 | - | - | |
| Dere03g1337 | 394 | Pfam | Zinc-finger of C2H2 type | 321 | 344 | - | - | |
| Dere03g1337 | 394 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 206 | 228 | IPR013087 | - | |
| Dere03g1337 | 394 | Gene3D | Classic Zinc Finger | 280 | 351 | - | - | |
| Dere03g1337 | 394 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 204 | 233 | IPR013087 | - | |
| Dere03g1337 | 394 | MobiDBLite | consensus disorder prediction | 353 | 394 | - | - | |
| Dere03g1337 | 394 | SUPERFAMILY | beta-beta-alpha zinc fingers | 317 | 351 | IPR036236 | - | |
| Dere03g1337 | 394 | SUPERFAMILY | beta-beta-alpha zinc fingers | 183 | 237 | IPR036236 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere03g1337 | 158 | 350 | C2H2 Transcription Factor Family | AT5G61190 | 23.762 | 2.00e-06 | 48.1 |