Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1334 ATGGCATTCCAGAGCAAATCCCACCTCTTCTTCTTGTTCCTATGTGTTGTTTCAGTCTCATCCACCGCTCTCGGTGTGCCTAAAGAGCAAGAAGAAGATCGAATCTCGGCCCTCCCTGGGCAGCCTCGTGTGACATTCTCACAGTTCTCCGGTTATGTCACTGTCAACGACCAACATGGCCGAGCTCTCTTCTACTGGTTAACTGAGGCCACCTCTTCCCCTCACACCAAGCCTCTCGTTCTATGGCTCAATGGAGGCCCGGGTTGCTCATCAGTGGCATATGGGGCATCAGAGGAAATTGGGCCATTCCGGATAAATAAAACTGGTTCTTCGTTGTATCTTAACAAGTATTCATGGAACAGAGAAGCAAATATTCTCTTTCTTGAATCACCTGCTGGTGTTGGTTTCTCCTACACAAATACAAGCTCTGACCTCAAAACTTCTGGGGACAAAAGGACAGCCCAGGACGCTCTAATTTTTTTAATTAGATGGATGTCAAGATTCCCACAATATAAGTACAGAGACTTCTACATTGCTGGGGAGAGCTATGCCGGGCACTATGTTCCCCAGTTGGCTCAAAAGATCTATGATTATAATAAAGCAAACTCCCATATCATTAATCTTAAAGGTTTCATTGTGGGGAATGCTGTGACAGATGCCTACAATGATGGGGTTGGAACTGTGACATATTGGTGGAGCCATTCTATGATATCTGATCAATCGTACAAATCTATCCTCAAATACTGCAATTTCACGGCAGAAAAAACATCTAAAATGTGTGATGATGCTGTGCGTTACGCGGTTAACCATGAATTTGGAAGGATTGATCAATACAGTATTTATAGCCCTCTGTGCAGGCACAACAATACTGTACAGCACATAAGGCTCAAGAGTACAATTTTACATAGGATTTCAGGGTATGATCCATGTACTGAAGACTACGCAGAGAAGTACTATAATCGCCCTGATGTGCAAAAAGCAATGCATGCAAATATTACAAGCATTCCTTACAAATGGACTGCTTGCAGTGATGTGCTCCTGAATTACTGGAAGGACTCCGCAGTTTCTATATTGCCCATTTACAAAGAGTTAATTGCAGCTGGTTTGAGAATCTGGGTGTTCAGCGGGGACACAGATTCTGTGGTTCCAGTGACTGCCACTAGATTTTCCCTCAACAGTCTCAACCTCACCGTTAAAACTTGTTGGTACCCATGGTACTCAGGTGAACAGGTAGGTGGATGGACAGAGGTCTATGATGGGCTAACCTTTGCAACAGTGCGTGGGGCAGGGCATGAAGTACCATTATTTCAGCCAAGACGAGCTTTCACTCTCTTCAGATCATTCTTGGAAGGAAAGGAGCTACCAAAATCCTGA 1374 0.444 MAFQSKSHLFFLFLCVVSVSSTALGVPKEQEEDRISALPGQPRVTFSQFSGYVTVNDQHGRALFYWLTEATSSPHTKPLVLWLNGGPGCSSVAYGASEEIGPFRINKTGSSLYLNKYSWNREANILFLESPAGVGFSYTNTSSDLKTSGDKRTAQDALIFLIRWMSRFPQYKYRDFYIAGESYAGHYVPQLAQKIYDYNKANSHIINLKGFIVGNAVTDAYNDGVGTVTYWWSHSMISDQSYKSILKYCNFTAEKTSKMCDDAVRYAVNHEFGRIDQYSIYSPLCRHNNTVQHIRLKSTILHRISGYDPCTEDYAEKYYNRPDVQKAMHANITSIPYKWTACSDVLLNYWKDSAVSILPIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLNSLNLTVKTCWYPWYSGEQVGGWTEVYDGLTFATVRGAGHEVPLFQPRRAFTLFRSFLEGKELPKS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1334 457 Gene3D alpha/beta hydrolase 29 287 IPR029058 -
Dere03g1334 457 Pfam Serine carboxypeptidase 40 451 IPR001563 GO:0004185|GO:0006508
Dere03g1334 457 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Dere03g1334 457 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 438 IPR001563 GO:0004185|GO:0006508
Dere03g1334 457 Gene3D - 357 451 - -
Dere03g1334 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 421 434 IPR001563 GO:0004185|GO:0006508
Dere03g1334 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185|GO:0006508
Dere03g1334 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Dere03g1334 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185|GO:0006508
Dere03g1334 457 FunFam Carboxypeptidase 306 454 - -
Dere03g1334 457 FunFam Carboxypeptidase 29 287 - -
Dere03g1334 457 ProSitePatterns Serine carboxypeptidases, histidine active site. 421 438 IPR033124 GO:0004185
Dere03g1334 457 Gene3D - 310 346 - -
Dere03g1334 457 FunFam Carboxypeptidase 357 451 - -
Dere03g1334 457 SUPERFAMILY alpha/beta-Hydrolases 29 455 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1334 Dere-ChrDere03 21963127 21971821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1334 315 454 Calmodulin-binding Proteins AT2G22960 30.496 1.24e-15 73.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1334 03 21963127 21971821 Dere03g1334 03 21963127 21971821 ECH