Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1330 ATGAAGGAGAAGAGAGTTACTAACATTTATAGGTTGGATGACCTGGACTCTAGACTATCTTCATCTTCTGATACTGGTGTTAAAAAAAGTGGATTTAGTATTGAGAGATTAAACCATGGCAGCCATGCAAGCACTGCAACCTCTAGGTCTTTCAAAAGAGGAATGAGAAAGGGATCTGAAGGACTGAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCGAGGGCAGTGTTCCCAGAAGATCTTAAAGTGTCAGAGAAGAAGATATTTGATCCTCAAGACAAATTTCTGCTTCTGTGGAATAAACTTTCTGTTGTCTCATGCATTTTGGCTGTGTCCGTGGATCCATTATTTTTCTATCTCCCTGTCATCAATGATTCATTAAACTGCCTTGGTATAGACCGAAAGTTGGCAATAATAATCACCACCTTGAGGACAGTTGTTGATGCTTTCTATCTTATACACATGGCTCTTCAATTCCGCACTGCCTATATTGCTCCATCATCTCGTGTCTTTGGACGAGGAGAGCTTGTGATAGATTCAACACAAATAGCCAAGCGATACCTGCGGCGGTATTTCATTGTCGATTTTCTGTCTGTGTTGCCCTTACCACAGATTGTTGTTTGGAGATTTCTTCAAAGATCAAAGGGCTCAGATGTATTGGCAACAAAGCATGCCTTGCTGTTCATTATCTTACTTCAGTATGTTCCTAGATTTCTCCGGATGGTACCACTGACTTCAGAACTTAAGAGAACGGCTGGTGTCTTTGCTGAAACTGCATGGGCCGGTGCTGCATATTATTTGCTGTTATACATGCTTGCTAGTCATATAGTTGGGGCCTTTTGGTACTTGTTAGCTGTTGAACAGAATGACTCATGCTGGCAGAAGGCTTGTAATGATGGGTGCGATAAAAACTTCTTGTATTGTGGCAACCAGCACATGGCAGGTTATAGTGCCTGGCAAAATAAAAGTGATGTCGTTCTTAAGAAAAATTGCTCTGCAGATGATAATTCCCCTTTTGATTTTGGAATTTTTAAACAAGCATTGTCATCTGGCATTGTTTCGTCCAAAAAGTTTGTGTCCAAATACTGTTATTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTGAAACTAGCACTTATACTGGGGAGGTTATCTTTTCAATAGCGCTAGCCATATTTGGGCTTATCCTCTTTGCGCTTCTGATTGGTAACATGCAGACGTATCTTCAGTCTCTTACCATAAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGTTTGCTCCCACAAGAGCTGAGAGAGCGGGTTAGACGCTATGATCAGTATAAGTGGTTGGCAACACGCGGCGTAGATGAAGAAAGTTTGGTTCAGACACTACCAAAGGATCTTAGAAGAGATATTAAGCGTCACCTCTGTCTGGCTTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTCGATGCCATTTGTGAGAGACTGAAACCTTGTCTCTTCACTGAGAGTACATACATTGTTCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGTGGTCGCCTTGAAAGTGTTACCACAGATGGCGGGAGGAGTGGGTTTTTTAACCGCAGTCTTCTTAAAGAGACTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCACTGGATCCTAAATCTGGTTCTAACCTCCCTACTTCTACACGTACAGTGAAGGCATTAACTGAGGTTGAGGCTTTTGCCTTAATTGCTGATGAGTTAAAATTTGTTGCTAGTCAGTTTAGGCGCCTTCATAGTAGACAGGTTCAACACACCTTCCGCTTCTACTCACAGCAATGGAGAACTTGGGCTGCATGCTTTATCCAAGCAGCTTGGCGTCGATATTCTAAGAGGAAGACTATGGAGCTTCGTCGGAAGGAAGAAGAACCTGAAGAGTTGGAAGGAACTCGCAACAATGTCACCAGTGGTTCATACAGCATTGGTGCTACCTTCTTAGCTTCAAAGTTTGCTGCCAATGCTCTTCGAGGTGTACATCGTAATCGGAATGCAAAGACTGCAAGGGAGTTGGTGAAATTACAGAAACCTCCAGAGCCTGACTTTACTGCAGATGATGCAGATTAA 2169 0.4315 MKEKRVTNIYRLDDLDSRLSSSSDTGVKKSGFSIERLNHGSHASTATSRSFKRGMRKGSEGLKSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLSVVSCILAVSVDPLFFYLPVINDSLNCLGIDRKLAIIITTLRTVVDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDSTQIAKRYLRRYFIVDFLSVLPLPQIVVWRFLQRSKGSDVLATKHALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAVEQNDSCWQKACNDGCDKNFLYCGNQHMAGYSAWQNKSDVVLKKNCSADDNSPFDFGIFKQALSSGIVSSKKFVSKYCYCLWWGLQNLSTLGQGLETSTYTGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEESLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKETDFCGEELLTWALDPKSGSNLPTSTRTVKALTEVEAFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELRRKEEEPEELEGTRNNVTSGSYSIGATFLASKFAANALRGVHRNRNAKTARELVKLQKPPEPDFTADDAD 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1330 722 SMART cnmp_10 494 625 IPR000595 -
Dere03g1330 722 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 81 716 - -
Dere03g1330 722 PRINTS EAG/ELK/ERG potassium channel family signature 156 165 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere03g1330 722 PRINTS EAG/ELK/ERG potassium channel family signature 457 464 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere03g1330 722 PRINTS EAG/ELK/ERG potassium channel family signature 363 380 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere03g1330 722 PRINTS EAG/ELK/ERG potassium channel family signature 273 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere03g1330 722 PRINTS EAG/ELK/ERG potassium channel family signature 407 416 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere03g1330 722 PRINTS EAG/ELK/ERG potassium channel family signature 389 400 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere03g1330 722 MobiDBLite consensus disorder prediction 701 722 - -
Dere03g1330 722 Gene3D Helix hairpin bin 422 485 - -
Dere03g1330 722 SUPERFAMILY cAMP-binding domain-like 423 613 IPR018490 -
Dere03g1330 722 FunFam Cyclic nucleotide-gated ion channel 1 421 485 - -
Dere03g1330 722 Gene3D Jelly Rolls 492 612 IPR014710 -
Dere03g1330 722 CDD CAP_ED 494 625 IPR000595 -
Dere03g1330 722 ProSiteProfiles IQ motif profile. 630 659 IPR000048 GO:0005515
Dere03g1330 722 SUPERFAMILY Voltage-gated potassium channels 91 416 - -
Dere03g1330 722 FunFam Cyclic nucleotide-gated ion channel 1 492 610 - -
Dere03g1330 722 Pfam Ion transport protein 99 420 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dere03g1330 722 Gene3D - 106 419 - -
Dere03g1330 722 ProSiteProfiles cAMP/cGMP binding motif profile. 494 578 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1330 Dere-ChrDere03 21921203 21929871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1330 8 720 Ion Channels AT2G23980 77.641 0.0 1146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1330 03 21921203 21929871 Dere03g1330 03 21921203 21929871 ECH