Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1311 ATGCAGGGAATAAACTCTCTCTTAAACTCTTCTCAAATTCCTCTCCAAGACCTCCATAACCACCACCACCAGATCCAGAATTCCCAGATGCATCCTCCTCAGCTCAGCCACGCCTCCTCCTCTCACTTTGACCCCACTTCCCACGACGATTTTCTCGACCAAATGCTCTCCACCCTTCCTTCTTCCTCCTGGCCCGACCTTAACCCCAAGCCCTTCTGGGACGATACGCCGCCGCCACCCAACGCCGAGAATGTTGCTTTTCAGTATGATGAGCACGCAAGCTTGGCATCCAAGTTCCGGAACCACCAGATCAGTAGTGGCGGCAGCTCCCCCTCTACCAAGTCGTCCGCGGCGGCTTTGATGCTTCAGGCTCAGCAGCAGCTTCTGATGTCCCGAGGTGTCTCCGGAGCCGGAGGTTTAGGCTCGTCGGCCGCCGGTGACTCGGGGCTCCTTCCGATGCCGTTGTCGTTGGGAGGGGGAGACGTTGACCGCTCCCGTAACGACGTCGTGGATGGGGCATCGTTCAAATGTCCCAATCCGGGTGGTGAGGGCTCAGTCCAAGCTCTGTACAACGGGTTCGCCAGTTCTCTGAATGGCGGTGGTCAAGCTTCGAATCAGACTCAACATTTTCATCATCCCCAGGGCCAGAATCTCGGAGCTTCTGGGGCCGCAACAAACCAAGCTCCGGCGAGCGGTACTCCGGCACAACCGAGGCAGAGAGTTAGGGCTAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATTGCAGAGAGAATGAAGGCACTGCAGGAACTAGTTCCCAATGCTAACAAGACAGACAAGGCCTCGATGCTGGACGAGATCATCGATTATGTGAAGTTCCTACAGCTTCAAGTTAAGGTTCTGAGTATGAGCAGGTTGGGCGGTGCAGCTGCTGTGGCTCCCCTAGTTGCTGACATGGCCTCCGAGGGAGGCGGTGGTGGAGGTGACTGCATTCAAGCCACCGCCAACGGTGGTGGGGTCCTCCCTCGCAACTCCAACGCCAACCAGACGGCGTCGTCCTCCTCCAACGACAGCCTCACCATGACGGAGCACCAGGTGGCCAAGCTTATGGAGGAAGACATGGGCTCCGCCATGCAGTACCTTCAGGGCAAGGGTCTCTGCCTCATGCCCATCTCTCTGGCCACCGCCATCTCCACCGCCACGTGTCACTCCAGGAACCCCTTGATCAACAGCGCCGGCAACCATCAGAGCAACACCGGGGTAGCAGCCAGCGGCGGCGGAGGGCCGTCGTCTCCCAGCATGTCGGTGTTAACTGTGCAGTCGGCGACGATGGGTAACGGTGGCGCTGACAGCTCCGTTAAGGACGCAGCTTCCGTTTCGAAGCCGTGA 1395 0.5842 MQGINSLLNSSQIPLQDLHNHHHQIQNSQMHPPQLSHASSSHFDPTSHDDFLDQMLSTLPSSSWPDLNPKPFWDDTPPPPNAENVAFQYDEHASLASKFRNHQISSGGSSPSTKSSAAALMLQAQQQLLMSRGVSGAGGLGSSAAGDSGLLPMPLSLGGGDVDRSRNDVVDGASFKCPNPGGEGSVQALYNGFASSLNGGGQASNQTQHFHHPQGQNLGASGAATNQAPASGTPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMASEGGGGGGDCIQATANGGGVLPRNSNANQTASSSSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLINSAGNHQSNTGVAASGGGGPSSPSMSVLTVQSATMGNGGADSSVKDAASVSKP 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1311 464 MobiDBLite consensus disorder prediction 413 450 - -
Dere03g1311 464 Gene3D - 242 304 IPR036638 GO:0046983
Dere03g1311 464 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 59 399 - -
Dere03g1311 464 SMART finulus 253 302 IPR011598 GO:0046983
Dere03g1311 464 MobiDBLite consensus disorder prediction 199 234 - -
Dere03g1311 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 245 307 IPR036638 GO:0046983
Dere03g1311 464 Pfam Helix-loop-helix DNA-binding domain 252 297 IPR011598 GO:0046983
Dere03g1311 464 MobiDBLite consensus disorder prediction 51 65 - -
Dere03g1311 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 296 IPR011598 GO:0046983
Dere03g1311 464 MobiDBLite consensus disorder prediction 413 464 - -
Dere03g1311 464 FunFam Transcription factor bHLH66 244 309 - -
Dere03g1311 464 MobiDBLite consensus disorder prediction 22 84 - -
Dere03g1311 464 MobiDBLite consensus disorder prediction 199 252 - -
Dere03g1311 464 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1311 Dere-ChrDere03 21620588 21623986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1311 234 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 65.164 1.17e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g1311 HLH 1.8e-09 No_clan