Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1309 ATGGCTGGAACTGGAGTGTTTGCTGAGATTTTAGATGGAGATGTGTACAAGTACTACTCTGATGGTGAATGGAAGAAATCCTCTTCTGCTAAAAGTGTTTCTATCATCAACCCCACTACCAGAAAGACTCAATACAAAGTTCAGGCTTGTACACAAGAAGAGGTTAATAAAGTCATGGACTCAGCAAAATCTGCACAGAAGTCATGGGCAAAGACTCCATTGTGGAAGCGAGCTGAACTGCTTCATAAGGCAGCTGCTATCCTCAAGGAGCACAAGGCTCCAATTGCAGAGTGCCTGGTGAAAGAGATAGCAAAGCCGGCCAAAGATGCAGTTACTGAGGTTGTAAGATCTGGGGATCTTGTATCTTACTGTGCTGAAGAAGGAGTGAGGATTCTCGGAGAGGGAAAGTTCTTGGTTTCAGATAGTTTTCCGGGAAATGAAAGGACAAAATACTGCCTCACATCCAAGATTCCGTTGGGAGTCATTTTAGCCATTCCACCATTTAACTACCCTGTCAATCTTGCTGTGTCAAAAATTGCTCCTGCGCTGATTGCTGGAAACTCCCTTGTGCTCAAGCCTCCAACTCAGGGTGCTGTTTCTGCCCTGCATATGGTGCATTGCTTTCACTTGGCTGGTTTTCCCAAAGGCCTGATCAGTTGTGTTACTGGCAAAGGCTCTGAGATTGGTGACTTCCTTACTTTGCATCCGGGAGTGAACTGTATAAGCTTCACCGGAGGAGATACTGGAATTGCAATTTCAAAGAAGGCGGGCATGATTCCTCTCCAAATGGAGTTGGGGGGAAAAGACGCCTGCATTGTGCTTGAAGATGCAGACCTGGATTTGGTGGCTGCAAATATTATAAAAGGAGGCTTTTCCTACAGTGGTCAGAGGTGCACTGCTGTTAAGGTTGTCCTAGTGATGGAATCCGTTGCTGATGCTTTGGTTGAGAAAGTAAAGGCAAGGGTGGCAAAACTGACTGTTGGGCCACCAGAGAATGACTGTGACATCACCCCGGTTGTATCAGAATCATCAGCCAATTTCATTGAAGGTCTGGTTATCGATGCTAAACAGAAAGGAGCAACATTCTGCCAGGAATACAGAAGGGAAGGAAACCTCATTTGGCCCTTGTTACTTGACAATGTGAGGCAGGATATGAGAATTGCATGGGAGGAGCCATTTGGACCTGTTTTGCCAGTTATTAGGATCAATTCTGTTGAAGAAGGAATCCACCATTGCAATGCTAGCAATTTTGGACTCCAGGGTTGTGTGTTCACAAAGGATGTGAACAAAGCAATATTGATCAGTGATGCTATGGAGACAGGAACAGTTCAGATAAACTCTGCTCCAGCTCGTGGACCAGATCATTTTCCCTTTCAGGGAATCAAGGACAGTGGAATTGGATCCCAAGGAATTACCAACAGCATAAACATGATGACCAAGGTCAAGACAACTGTCATCAATTTGCCCACTCCTTCTTATACTATGGGTTAA 1491 0.4507 MAGTGVFAEILDGDVYKYYSDGEWKKSSSAKSVSIINPTTRKTQYKVQACTQEEVNKVMDSAKSAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTLHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKARVAKLTVGPPENDCDITPVVSESSANFIEGLVIDAKQKGATFCQEYRREGNLIWPLLLDNVRQDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDVNKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPTPSYTMG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1309 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 281 - -
Dere03g1309 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Dere03g1309 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Dere03g1309 496 SUPERFAMILY ALDH-like 16 487 IPR016161 GO:0016491
Dere03g1309 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
Dere03g1309 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Dere03g1309 496 PANTHER ALDEHYDE DEHYDROGENASE 1 495 - -
Dere03g1309 496 Pfam Family of unknown function (DUF5356) 12 94 IPR020149 -
Dere03g1309 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Dere03g1309 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Dere03g1309 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1309 Dere-ChrDere03 21587178 21592820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1309 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.927 0.0 949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1309 03 21587178 21592820 Dere03g1309 03 21587178 21592820 ECH