Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1307 ATGCCTCCCTCTCTGATTCTGCACGTCGAGACAGGGGCTTCCAGAGTGAAATGTGGTGTGTCTTTCCCTTCCTTCAAGCTTGCTAAAACATCTGTGCTTAAGGGCTTTGAAAGAGCCCCTAGTTCTATATACCTCCGTTCCATTCCCCCCTGCCTCGTCTGCCACCTGGTGCGCCTGGGAGATCTTTCGCCTCCATCCTCTTCAAGCAACGAGCTAACTTTTCATCTCAAAGGCAGTAAAAATATGTCAGGAGAAGAAGATGTAGCGGTACCTGCAGAGGCTTCAGCACCCCTGGGTGAGGCTATGGACATCATGACTGCCTTACAGCTTGTGCTGAGGAAGTCACTAGCTCATGGGGGGCTTGCACGAGGACTCCATGAAGGTGCCAAGGTGATTGAAAAGCATGCTGCACATCTCTGCGTGCTGGCTGAGGACTGTGATCAGCCAGATTATGTTAAACTGGTCAAGGCACTTTGTGCCGATCATAATGTGAAGTTAATGACGGTTGCTAGTGCTAAAACACTTGGCGAATGGGCTGGTTTGTGCAAGATTGATTCTGAGGGCAAAGCAAGAAAAGTAGTTGGCTGCTCCTGTGTTGTTGTGAAGGATTTTGGGGAGGAGTCACCGGCATTAGATATTGTTCAGCAATACATTAAGGCTCAATAA 666 0.4895 MPPSLILHVETGASRVKCGVSFPSFKLAKTSVLKGFERAPSSIYLRSIPPCLVCHLVRLGDLSPPSSSSNELTFHLKGSKNMSGEEDVAVPAEASAPLGEAMDIMTALQLVLRKSLAHGGLARGLHEGAKVIEKHAAHLCVLAEDCDQPDYVKLVKALCADHNVKLMTVASAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESPALDIVQQYIKAQ 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1307 221 FunFam 40S ribosomal protein S12 88 221 - -
Dere03g1307 221 PANTHER 40S RIBOSOMAL PROTEIN S12 91 220 - -
Dere03g1307 221 PRINTS Ribosomal protein S12E family signature 125 141 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere03g1307 221 PRINTS Ribosomal protein S12E family signature 191 204 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere03g1307 221 PRINTS Ribosomal protein S12E family signature 111 124 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere03g1307 221 PRINTS Ribosomal protein S12E family signature 166 187 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere03g1307 221 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 107 200 IPR004038 -
Dere03g1307 221 Gene3D - 86 221 IPR029064 -
Dere03g1307 221 ProSitePatterns Ribosomal protein S12e signature. 107 125 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere03g1307 221 SUPERFAMILY L30e-like 100 220 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1307 Dere-ChrDere03 21574059 21579455 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1307 100 221 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 72.951 1.27e-63 192