Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1293 ATGTACTATTCGTTGCCTTTTGGGGGGACAACCTTCAGATCATCTGGGCTTCATGGGACTGCACAAGGGAGCCCTGAAACACTCTTGGTGAGGGCAAGCATAGAATTAAAAGACAACGCTGCACACTCAAAAGAGGAGGGAGGAAGGAGGGCGAACAACAAAAGTTGGGTTTGTATCCAAGGTGTTGTATGTATGGCTGTGTTTTTTTCAATGGGTGATTTGGGAATAGGTTTTGGATCTGAAAGTGAGGTGGGTGATGGCCCTCCAAAGAATGTATCATTGGATGTTACAGGAGCAGCGTTGTCATCGGACGTTCTGACAAAGAAGCTAGCGAGGCAGCTCGATTTCACGAGTTATAGTGGTATGGCCGTGCCTGACCACCCGCAATCACAGCTTCAGCCTCAAGCGCAGCCAGTGGAACAGAGTCAGCCGCAGCCACGCCCACCTACTATGCAACCGGTTGTTGTGGTGCCGTTGCCCACGCAGGCTCCTCATTCTTCAGCGAGGGTTGGTAAACCAGAATCTCCGAAATCAAGATCAAGTGCCAACTTTGAAATGAAGGAGATCACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACACTCAAAATGTCTAAAGCTATATTGTGAATGTTTTGCATCAGGAATATATTGTGATGGGTGCAACTATGTGAACTGCCATAACAATGTTGAAAACGATGCCGCGAGACGAGAAGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCTAAAATTGCAAGCAGCCCTCAAGGAACACGTGATAGCAGGGAGGAGGCTGGTGAAGTTCTAATATTAGGAAAGCACAACAAGGGGTGCCATTGCAAAAAATCAGGATGCCTCAAGAAGTACTGTAAGTGCTTCCAAGTCAACATTCTTTGCTCTGAAAATTGCAAATGCATGGACTGCAAAAATTTTGAAGGAAGCAAAAACTGA 963 0.4611 MYYSLPFGGTTFRSSGLHGTAQGSPETLLVRASIELKDNAAHSKEEGGRRANNKSWVCIQGVVCMAVFFSMGDLGIGFGSESEVGDGPPKNVSLDVTGAALSSDVLTKKLARQLDFTSYSGMAVPDHPQSQLQPQAQPVEQSQPQPRPPTMQPVVVVPLPTQAPHSSARVGKPESPKSRSSANFEMKEITPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNYVNCHNNVENDAARREAVEATLERNPNAFRPKIASSPQGTRDSREEAGEVLILGKHNKGCHCKKSGCLKKYCKCFQVNILCSENCKCMDCKNFEGSKN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1293 320 SMART CXC_2 277 318 IPR033467 -
Dere03g1293 320 SMART CXC_2 192 232 IPR033467 -
Dere03g1293 320 MobiDBLite consensus disorder prediction 123 140 - -
Dere03g1293 320 PANTHER TESMIN/TSO1-RELATED 127 316 IPR028307 -
Dere03g1293 320 MobiDBLite consensus disorder prediction 141 155 - -
Dere03g1293 320 ProSiteProfiles CRC domain profile. 193 317 IPR005172 -
Dere03g1293 320 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 194 229 IPR005172 -
Dere03g1293 320 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 280 314 IPR005172 -
Dere03g1293 320 MobiDBLite consensus disorder prediction 121 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1293 Dere-ChrDere03 21236239 21237530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1293 81 319 CPP Transcription Factor Family AT2G20110 55.598 6.72e-85 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Dere03g1293 TCR 1.3e-11 No_clan