Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1292 ATGCAACCGGTTGTTGTGGTGCCGTTGCCCACGCAGGCTCCTCATTCTTCAGCGAGGGTTGGTAAACTAGAATCTCCGAAATCAAGATCAAGATCCAACTTTGAAATGAAGGAGATCACTCCAAAGAAGGAAAAGCAGTGTAATTGTAAACACTCAAAATGTCTAGAGCTATATTGTGAATGTTTTGCAACGGGAATATATTGTGATGGGTGCAACTATGTGAACTACCATAACAATGTTGAAAACGATGCCGCGAGACGAGAAGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCTAAAATTGCAAGCAGCCCTCATGGAACACGTGATAGCAGGGAGGAGGCTGGTGAAGTTCTAATATTAGGAAAGCACAACAAGGGGTGCCATTGCAAAAAATCAGGATGCCTCAAGAAGTACTGTAAGTGCTTCCAAGCCAACATTCTTTGCTCTGAAAATTGCAAATGCATGGACTGCAAAAATTTTAAAGCAAGCAGAAACCGAGACCAGAAAAACTAA 528 0.4242 MQPVVVVPLPTQAPHSSARVGKLESPKSRSRSNFEMKEITPKKEKQCNCKHSKCLELYCECFATGIYCDGCNYVNYHNNVENDAARREAVEATLERNPNAFRPKIASSPHGTRDSREEAGEVLILGKHNKGCHCKKSGCLKKYCKCFQANILCSENCKCMDCKNFKASRNRDQKN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1292 175 PANTHER TESMIN/TSO1-RELATED 6 168 IPR028307 -
Dere03g1292 175 ProSiteProfiles CRC domain profile. 43 167 IPR005172 -
Dere03g1292 175 SMART CXC_2 127 168 IPR033467 -
Dere03g1292 175 SMART CXC_2 42 82 IPR033467 -
Dere03g1292 175 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 45 79 IPR005172 -
Dere03g1292 175 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 130 164 IPR005172 -
Dere03g1292 175 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1292 Dere-ChrDere03 21220911 21221438 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1292 3 171 CPP Transcription Factor Family AT2G20110 66.286 7.20e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Dere03g1292 TCR 3.6e-12 No_clan