Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1278 ATGTTCACCAGAATCACAGTCGCGTCTGTTCTAATTATCCAAGTTCTTCTTCATTTAAAGTTTCCACCTTTACAAGCTCAATCATGGGTACAATCTGCTTACTGGTTTTCCGGTAGTGGATTTCCAATTTCTGACATAAACTCTCGTCTCTTCACCCACCTTATATGCGCTTTTGCGAAGGTGAACTCTTCGTCCTACGCGCTCTATGCCGCTTCAGCTGACGAGCGATTCTTCTCTTCTTTCACGACCACCTCTTCGATAAGAATTGCTCGGTCTTATGGGTTTCAAGGGCTTGACCTGTCCTGGGTTTCTGCTAACACAAGCTCTGACATGAACAACATGGGAAGGCTTTTTCAAGAGTGGACGGAAGCTGCAAATTCTGAGGCTAAAATCGCAAGCGATCCAGAATTAATTTTGACTGCAGCCGTTCAATACAAACCTGCCTTGTATGACCCTTCAAGTGATGTGAACACTGACTTTGGCATTAGGCAGTGGATTGATAGTGGAATTTCTACTGACAAGTTGGTCTTGGGTTTGCCATTTTATGGATATGCCTGGACCCTTAAGAACCTCAAAGACAACGCAATTGGGGCACCAGCAACAGGTCCAGCAATTACAGATGGTTTCGATGATGTCGAGGTTGTCAAAACTACGGTGTCTTATGCAAGCGAAAAGAAGCTACTTGGTTACATTGTCTGGGCTGTTTCCTACGATGATAACAATTGGGTGCTTTCCACTGCAGCAGCTCGACAGGTTGACGACACTGGATACAGTAGGAAGCGATTATTAGTGATCATTTTGCCTACAACTGTTGTATTTATTCTCCTATTAGGAGCAATACTTTTCTACTTGAGGAGGAGAATATTCAAGCCAAAGGTGACGGTTAATGCTGCTAGAGATCCTTGGTTAAAAGCAAATAATGAAGGTTCAGGACCTTTTTATGGCAATGCTCCTGATTTAAGAGTCTTTAGCTTTTCTGACATTGAGGTGGCCACAGATAGATTTTCTATCCAAAATAAGCTCGCAAGGGTGGTTATGGTCCAGTTTACAAGGCGGTATCTGCTGGATTGGAGAAAACGAGTTGACATCACTGAAGGAATTACTCAAGGACTTCTTTACCAACAAGAATATTCAAGATTGACTATAATTCATAGAGACATAAAAGCAAGCAATATTTTGTTAAACGATGAGATGAAGCCAAAGATCTCAGATTTTGGTATGGCAAGGATTTTCACAAAAGATGAACTTGAAGCAAACACAGGCAAGATAGTAGGAACTTAGAAAGTGCAAATGACAGGCCCTATGTTGGAAGTTTCTTCAATGTTGAGAAATGAAAGCAGTCTGGCATTCCCCGAGAAGCCTGCGTTTTCAAGAGAAAATGATGTGGAAGAGCCAAATGAAAGAAGACTGCAGATAGAAACTCATTCAATTAATGATGCAACTGTCTCACAAGTAGTAGCGCGACAGGAGTGCTGA 1476 0.4207 MFTRITVASVLIIQVLLHLKFPPLQAQSWVQSAYWFSGSGFPISDINSRLFTHLICAFAKVNSSSYALYAASADERFFSSFTTTSSIRIARSYGFQGLDLSWVSANTSSDMNNMGRLFQEWTEAANSEAKIASDPELILTAAVQYKPALYDPSSDVNTDFGIRQWIDSGISTDKLVLGLPFYGYAWTLKNLKDNAIGAPATGPAITDGFDDVEVVKTTVSYASEKKLLGYIVWAVSYDDNNWVLSTAAARQVDDTGYSRKRLLVIILPTTVVFILLLGAILFYLRRRIFKPKVTVNAARDPWLKANNEGSGPFYGNAPDLRVFSFSDIEVATDRFSIQNKLARVVMVQFTRRYLLDWRKRVDITEGITQGLLYQQEYSRLTIIHRDIKASNILLNDEMKPKISDFGMARIFTKDELEANTGKIVGTXKVQMTGPMLEVSSMLRNESSLAFPEKPAFSRENDVEEPNERRLQIETHSINDATVSQVVARQEC 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1278 491 Gene3D - 181 204 IPR029070 -
Dere03g1278 491 FunFam Os07g0541700 protein 337 426 - -
Dere03g1278 491 Pfam Glycosyl hydrolases family 18 148 238 IPR001223 GO:0005975
Dere03g1278 491 ProSiteProfiles Protein kinase domain profile. 171 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1278 491 SUPERFAMILY Protein kinase-like (PK-like) 351 426 IPR011009 -
Dere03g1278 491 Gene3D Transferase(Phosphotransferase) domain 1 339 431 - -
Dere03g1278 491 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 355 427 - -
Dere03g1278 491 Gene3D Glycosidases 84 147 - -
Dere03g1278 491 Gene3D Glycosidases 148 180 - -
Dere03g1278 491 SMART 2g34 29 238 IPR011583 GO:0008061
Dere03g1278 491 Gene3D Glycosidases 26 83 - -
Dere03g1278 491 Pfam Protein kinase domain 353 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1278 491 SUPERFAMILY (Trans)glycosidases 33 271 IPR017853 -
Dere03g1278 491 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 255 IPR001223 GO:0005975
Dere03g1278 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 382 394 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1278 Dere-ChrDere03 20933289 20936820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1278 11 255 Glycoside Hydrolase AT4G19810 31.768 1.64e-47 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere03g1278 Pkinase 1.4e-10 CL0016