LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere03g1277	ATGTTCTCCAGAATCGCAGTCGTGTCAGTTCTAATTATCCAACTTCTTCATTTGAAGATTCCTCCTTCGCAAGCTCAATCATGGGTTCAATCTGCTTACTGGTTTTCCGGTAGTGGATTTCCAATTTCTGACATAAACTCTCATCTCTTCACCCACCTCATATGCGCTTTTGCGAATGTGAACTCTTCGTCGTACGAGCTCTCGATCGATTCAGCTGACGAGCAATTCTTCTCTGGTTTCACGACCACCGTGAGACAAAAGAACCCATCTGTCACTACGCTTCTCTCTATTGGGGGTGGGCTAGCCGATTACTCTGTCTTATCGTCCATGGTAAGCAGCTCCTCTTCTAGGAAATCTTTCATTCAGTCTTCGATAAGAATTGCTCGGTCTTATGGGTTTCAAGGGCTTGACTTGTCCTGGGTTTCTGCTAACACAAGCTCTGACATGAACAATATGAGAAGGCTTTTTCAAGAGTGGAGGGAAGCTGCAAAGTCTGAGGCTAGAAACGCTAGCGATCCAGAATTGATTTTGACTGCAGCTGTTCAATACAAGCCTGGTATGGATTCTGCATCCTACCCTGTGGAATCAATTAGAAGTAACTTGAATTGGGTACATGTTTTGGCTTTTGATTACTACATGCCTGTGTGGGCAAATTTCACGGGTGCGCATGCAGCCTTGTATGACCCTTCAAGTGATGTGAACACTGACTCTGGCATTAGGCAGTGGATTGATAGTGGAATTTCTACTGACAAGTTGGTTTTGGGTTTGCCATTCTATGGATATGCCTGGACTCTTAAGAACCCCAAAGATAACGCAATTGGGGCACCAGCAACAGGTTTCGATGATGTCGAGGTTGTCAAAACTAAGGTGTCTTATGCAAGCGAAAAGAAGCTACTTGGTTACGTTGTCTGGGCTGTTTCCTACGATGACAACAATTGGGAGCTTTCCACTGCAGCAGGGAATGCTGCTAGAGTTCTTTGGTCAAAAGCAACTAAAGAAGGTGCAGGACCTTTTTATGGCAATGCTCCTGATTTGCAAGTCTTCAGCTTTTCTGACATTGAGTTGGCCACAGATAGATTTTCAATTGAAAATAAGCTCGGTCAGGGTGGTTATGGTCCAGTTTACAAGGGCATATTACCAGATGGTCAGGAAATAGCAGTGAAAAAGCTATCGAAAGCTTCCACGCAAGGATTTGAGGAATTCAAAAACGAGGTAACACTTACAGCAAGACTACAACATGTGAACCTTGTTCGGCTGTTGGGGTTCTGCACTGACAGAGAAGAACAAATGCTGGTATATGAGTACATGCCAAACAAAAGCCTCGACTTCTACCTCTTTGACCCGGCAAGACACGGTTATGTTCCTCCTGAATATGTAAAGAATGGTCTATACTCCACTAAGTCTGATGTTTACAGCTTTGGAGTTCTTCTTCTACAGATTATAAGTGGCAGGAGGACAGCATGCTTATATGGTGAACATGAAAATTTAAACCTCATGGAATATGCATATGAACTGTGGAAAGAAGGAGAAGGCATGGAGTTTGTGGATGCTTCCCTTGATGACACAACTTCACCATGTAAACTGTTAAGGTGCATGCAAATTGCTCTGTTATGCGTACAGGAAAGTGCAAATGACAGGCCATCTATGTTGGAAATATCTTCAATGTTGAGAAATGAAAGCAGTCTGGCATTCCCCAAGAAACCTGCGTTTTCAAGAGAAAATGATGTGGGAGAGCCGAATGAAAGAATAGTGCAGACAGAAACTCATTCAATTAATGGTGCAACCGTCTCTGAACTAGCTGCGCGATAG	1809	0.4356	MFSRIAVVSVLIIQLLHLKIPPSQAQSWVQSAYWFSGSGFPISDINSHLFTHLICAFANVNSSSYELSIDSADEQFFSGFTTTVRQKNPSVTTLLSIGGGLADYSVLSSMVSSSSSRKSFIQSSIRIARSYGFQGLDLSWVSANTSSDMNNMRRLFQEWREAAKSEARNASDPELILTAAVQYKPGMDSASYPVESIRSNLNWVHVLAFDYYMPVWANFTGAHAALYDPSSDVNTDSGIRQWIDSGISTDKLVLGLPFYGYAWTLKNPKDNAIGAPATGFDDVEVVKTKVSYASEKKLLGYVVWAVSYDDNNWELSTAAGNAARVLWSKATKEGAGPFYGNAPDLQVFSFSDIELATDRFSIENKLGQGGYGPVYKGILPDGQEIAVKKLSKASTQGFEEFKNEVTLTARLQHVNLVRLLGFCTDREEQMLVYEYMPNKSLDFYLFDPARHGYVPPEYVKNGLYSTKSDVYSFGVLLLQIISGRRTACLYGEHENLNLMEYAYELWKEGEGMEFVDASLDDTTSPCKLLRCMQIALLCVQESANDRPSMLEISSMLRNESSLAFPKKPAFSRENDVGEPNERIVQTETHSINGATVSELAAR	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere03g1277	602	SUPERFAMILY	Protein kinase-like (PK-like)	344	559	IPR011009	-
	Dere03g1277	602	Gene3D	Phosphorylase Kinase; domain 1	328	435	-	-
	Dere03g1277	602	SUPERFAMILY	(Trans)glycosidases	32	319	IPR017853	-
	Dere03g1277	602	MobiDBLite	consensus disorder prediction	568	602	-	-
	Dere03g1277	602	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	318	450	-	-
	Dere03g1277	602	Pfam	Glycosyl hydrolases family 18	33	309	IPR001223	GO:0005975
	Dere03g1277	602	CDD	GH18_plant_chitinase_class_V	26	315	-	-
	Dere03g1277	602	ProSiteProfiles	Protein kinase domain profile.	360	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere03g1277	602	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	28	326	IPR001223	GO:0005975
	Dere03g1277	602	Pfam	Protein tyrosine and serine/threonine kinase	452	555	IPR001245	GO:0004672\|GO:0006468
	Dere03g1277	602	Pfam	Protein tyrosine and serine/threonine kinase	361	446	IPR001245	GO:0004672\|GO:0006468
	Dere03g1277	602	SMART	2g34	28	309	IPR011583	GO:0008061
	Dere03g1277	602	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	328	435	-	-
	Dere03g1277	602	Gene3D	Glycosidases	25	326	-	-
	Dere03g1277	602	Gene3D	Transferase(Phosphotransferase) domain 1	438	568	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere03g1277	Dere-ChrDere03	20912387	20915985	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere03g1277	3	322	Glycoside Hydrolase	AT4G19810	41.918	1.54e-91	285

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Dere03g1277		Glyco_hydro_18	1.5e-58	CL0058