Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1264 ATGCAGCTCGGGGAAGCCTCTGGCGTAGCTGATTCCCTGGCCTCAGAGTCGTCTTCAAGTCTTTCTGATCATTTTCGGTCTTTTTCTCTCAATAAAGTGAATAATCAGATGGAGTCGGTTTCCGGAGACCGACGTGTAAAAAAAGATCCAAGGATCATTGCCAGAAAGAACTGTTATTATGTTTACTGTGCTGATCTTTCTGAACACTCAGATATCTTCTACAATCTAGAGGATCTTAAGGTTTGTTGCTTAATGTGCTTTCAAAGGTATCAGTTGGAATTATGCAAGAAAGCGTTGGAGGAAAATATAATTGTGTATTTGGGGACAGGTTGTGGGAAGACCCACATCGCTGTGCTGCTTATGCAAGAGATGGAACACTTGATACGGAAGCCCCAGAAGAACATATGCGTCTTTCTTGCGCCCACAGTAGCTTTAGTTAACCAGCCCAGATGGCTTCTGGTTGAGAGTCTGGGAGAGCCTGAGAGCAGCTTTCTTGTATCTGCTGGCCTTAGTATGTTATATTGTCATCCTGGTAGTTTGGTCAGTCCCAATCTCAAATTCTTGCCCTTTGCCTTAAATAAAGCTGTATATTCTAGGATTGCTAGCATTATGGATCTCATGAGTCATGATATTCAAGCAAATGTTATAGATGACTCTACTGATTTTAAGGTTGGGATTTACTGTGGGAGCTCAAAGCGCCTGAAGAGCCATCATGATTGGGAGCAAGAGATTGATCAATATGAGGTTCTTGTTATGACCCCTCAGATATTGTTGCACAGCTTATATCACACTTTCATAAAGATGGAGATGATTTCGCTTTTAATTTTTGATGAATGCCATCATGCTCAAGTCAGAAGCAACCATCCTTATGCAGAGATCATGAAAGTCTTCTATAAACCTAAGTCCACAAAGCTTCCCCGCATATTTGGCATGACTGCTTCTCCAGTTGTAGGAAAAGGTGCTTCTAGTAAAGTAAATCTATCGAAAAGCATCAATAGTCTTGAAATTATGCTTGCCTCTAAGGTATACACGGTCTTACAAAAGGAAGAATTGGATTCTTTTGTGGCAAATCCCGTGGTTACTATATATAATTATGGTCCTACTGCAAATGGGCCAACTAGTTTGTATGAGTATTATTATGCCAAACTAGGGGAGAATAAATGTCAGTGCATAGAACTCCTTAATAGGAGTACAGATGATCATCTGAAAAGAAGGAATACCAAGAAACTTCTGAACCGGATGCATGAAAATGTGGTTTTCAGTCTGGGAAATCTTGGCATTTGGGGAGCATTGCAAGCTAGTCGTGTTCTTTTGAGCGGTGATCACTCTGAGAGGCTTGAATTAGTGGAGGTGGAAGGAAATTCAAGTGATGACTCAATTTGTGACAAATATCTAGCACAGGCGGCTGACCTCTTTACTTCTGAATGCATGGAAGGTGACAGCATATCTGATCTATCTTCTCTGGAAATTTTAAAGGAGCCTTTTTTTTCAAGAAAGCTTTTACGTCTTATTGGGATACTGTCCTCATTTAGGCCACAACCATATATGAAATGTATAGTTTTTGTAAATAGAATTGTTACTGCAAGATCCCTCTCATACATACTGCGACAGCTCAAAATTCTAGCACTTTGGAAAAGTGATTTTCTAGTAGGAGTTCATGCTGGACTGAAGAGCATGTCTCGGAGGACCATGAACATCATTCTTGAGAAGTTTCGCTCTGGAGAGTTAAATTTATTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGATATTCAGACATGTTGCCTTGTCGTACGATTTGATCTTCCAGAAACTGTTGCAAGCTTTATACAGTCAAGAGGTCGTGCACGTATGCCTCAATCAGAATATGCATTTTTGGTGGACAGTGGCAATAAGAAGGATTTGGAATTAATTGAAGGCTTTAAGAAAGATGAAGACAGAATGAACATGGAAATTGCTGTTCGCACATCCAATGATACATATATCATCCCTGAGGAAAAAATTTACAAAGTTGAATCATCTGGTGCTTGTGTTAGTTCCGGATATAGTGTCTCATTGCTTCACCAGTTTTGTTCCAAACTTCCGCATGATGAGTACTTTGACCCCAAGCCAAGATTTTTTTACTTTGATGATTTAGGGGGAAGTGTCTGTCACATAACATTACCTTCCAATGCTCCCATACATCAAATTGTCAGTACACCACAATTTTCTATGGAAGCTGCTAAGAGGGATGCTTGTTTGAAAGCAATTAAGGAACTGCATAGATTAGGTGCCTTGAGTGATTGTCTGTTGCCAAAGCAAGATGATGCAAACCCAGAGGAGCAGGCTTCTGACTCTCGTAATTCAGATGTATTTGAAGAAGATGACAATTCACGAGGAGAATTACATGAGATGCTAGTTCCTTCTGCCTTTAGACAGTCATGGATAAACAAGGATAACATTGTCAATCTTAACTCTTACTTCTTAAAATTTAGACCCTCTCCAGAGGATCGGATCTATAAAGAGTTTGGTTTATTTATCATGACATGTCTTCCTGTGGAGGCTGAGAAACTGGAACTTAATCTTCATCTTGCTCATGGTAGAACTGTGATGACACAATTTGTTCCATTTGGTGTTGCCAAATTTGGCAAAGCTGAGATTAAGATGGCACAGCATTTTCAGGAGATGTTCCTCAAGATTATTCTTGACCGATCAGAATTTATTCCTGAATTTGTACTGTTGGGTAAAAATGATGTCCCTCAAGCAAGCACATCAACCTTCTATCTTTTGCTTCCTGTCATATTGCAAGACTCTGAAAATACTATGACAGTGGACTGGAAGACCGTGAGCAGATGTCTGTCTTCACCAATTTTCAGGCACCCAGATGGTACTGTAACACTGAAGCCATCTCCTAACCTGCGACTTGCTGATGGTTGCACAAGTGTAAGAGATGTTGAGAATAGTTTAGTCTATGCCCCACATAAGAAGGAGTTTTATTTTGTTACTAATATTGTTAATGAAAGAAATGGACTGAGTCCTTATAGAGATTCCGGCAGTTCAAGCTATGTGGATCACTTGATTGAAAAGTTTTCCATTCATCTTAAATACCCTGAGCAACCGCTTCTCCATGCAAAGCCACTTTTCAATTTGCACAACTTGCTTCACAACCGAAAGCAAGAGGACACAGGTTCTATTTGCGGTTTATGGTACTCAACTGTTTTGTTTGTGGAAGCTGTACTTCTTCCTCCGGAGCAGAGCCTTTGGAAGGTCAAGTAG 3255 0.4025 MQLGEASGVADSLASESSSSLSDHFRSFSLNKVNNQMESVSGDRRVKKDPRIIARKNCYYVYCADLSEHSDIFYNLEDLKVCCLMCFQRYQLELCKKALEENIIVYLGTGCGKTHIAVLLMQEMEHLIRKPQKNICVFLAPTVALVNQPRWLLVESLGEPESSFLVSAGLSMLYCHPGSLVSPNLKFLPFALNKAVYSRIASIMDLMSHDIQANVIDDSTDFKVGIYCGSSKRLKSHHDWEQEIDQYEVLVMTPQILLHSLYHTFIKMEMISLLIFDECHHAQVRSNHPYAEIMKVFYKPKSTKLPRIFGMTASPVVGKGASSKVNLSKSINSLEIMLASKVYTVLQKEELDSFVANPVVTIYNYGPTANGPTSLYEYYYAKLGENKCQCIELLNRSTDDHLKRRNTKKLLNRMHENVVFSLGNLGIWGALQASRVLLSGDHSERLELVEVEGNSSDDSICDKYLAQAADLFTSECMEGDSISDLSSLEILKEPFFSRKLLRLIGILSSFRPQPYMKCIVFVNRIVTARSLSYILRQLKILALWKSDFLVGVHAGLKSMSRRTMNIILEKFRSGELNLLVATKVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKDLELIEGFKKDEDRMNMEIAVRTSNDTYIIPEEKIYKVESSGACVSSGYSVSLLHQFCSKLPHDEYFDPKPRFFYFDDLGGSVCHITLPSNAPIHQIVSTPQFSMEAAKRDACLKAIKELHRLGALSDCLLPKQDDANPEEQASDSRNSDVFEEDDNSRGELHEMLVPSAFRQSWINKDNIVNLNSYFLKFRPSPEDRIYKEFGLFIMTCLPVEAEKLELNLHLAHGRTVMTQFVPFGVAKFGKAEIKMAQHFQEMFLKIILDRSEFIPEFVLLGKNDVPQASTSTFYLLLPVILQDSENTMTVDWKTVSRCLSSPIFRHPDGTVTLKPSPNLRLADGCTSVRDVENSLVYAPHKKEFYFVTNIVNERNGLSPYRDSGSSSYVDHLIEKFSIHLKYPEQPLLHAKPLFNLHNLLHNRKQEDTGSICGLWYSTVLFVEAVLLPPEQSLWKVK 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1264 1084 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 333 IPR014001 -
Dere03g1264 1084 Pfam Dicer dimerisation domain 683 768 - -
Dere03g1264 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 637 IPR027417 -
Dere03g1264 1084 Pfam Helicase conserved C-terminal domain 513 617 IPR001650 -
Dere03g1264 1084 Gene3D - 83 160 IPR027417 -
Dere03g1264 1084 PANTHER DICER-RELATED 100 1050 - -
Dere03g1264 1084 FunFam Endoribonuclease dicer-like 1 678 774 - -
Dere03g1264 1084 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 683 773 IPR005034 GO:0016891
Dere03g1264 1084 ProSiteProfiles PAZ domain profile. 948 1076 IPR003100 GO:0005515
Dere03g1264 1084 SMART helicmild6 529 619 IPR001650 -
Dere03g1264 1084 CDD DEXHc_dicer 89 345 - -
Dere03g1264 1084 Gene3D - 206 366 IPR027417 -
Dere03g1264 1084 Gene3D - 492 654 IPR027417 -
Dere03g1264 1084 MobiDBLite consensus disorder prediction 767 788 - -
Dere03g1264 1084 Gene3D paz domain 972 1070 - -
Dere03g1264 1084 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 499 656 IPR001650 -
Dere03g1264 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 300 IPR027417 -
Dere03g1264 1084 FunFam Endoribonuclease dicer-like 1 490 653 - -
Dere03g1264 1084 Gene3D Dicer dimerisation domain 679 775 IPR038248 -
Dere03g1264 1084 SMART ultradead3 83 348 IPR014001 -
Dere03g1264 1084 Pfam Type III restriction enzyme, res subunit 96 315 IPR006935 GO:0003677|GO:0005524|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1264 Dere-ChrDere03 20660965 20679564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1264 517 653 Eukaryotic Initiation Factors Gene Family AT3G19760 28.571 1.19e-06 50.4