Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1262 ATGGAGATTTTCAGATGCTTGTATTTCAATCTTCTCGCTACTTTCATGTTTTTCTTAGCAGTTTTAGCAATGGATCCCTATTCAGAGGCACTTCTGAACCTCAAATCTGAACTCGTAGATAATGGTAACAGTTTACACGACTGGGTGGTTCCGTCTGGAAGAAACTTAACGGGAAAATCCTATGCATGTTCTTGGTCTGGTATCAAGTGTAACAAGAACTCAACAGTTGTAACTTCAATAGACCTATCGATGAAGAAACTGGGAGGTGTATTGTCAGGGAAGCAATTTAGTCTGTTCACAAAGCTTGCTGATTTGAACCTCAGCCACAACTTTTTCTCTGGGCAGCTTCCGGTGGCAATTTTTAACCTCACCAGCCTAAGAAGCATGGATATCAGCAGAAACAATTTTTCTGGTCAATTCCCTGGCGAAATTTCCTCCCTTCAAAATTTAGTTGTTCTTGATGCCTTCAGCAACAGCTTCTATGGGCCATTGCCCGCGAAACTTTCCCAGCTTGAAAATCTCAAGGTTCTTAATCTGGCAGGAAGTTACTTCAAAGGACCAATTCCATCTGAATACGGTTCTTTTAGAAGCCTTGAGTTTCTTCATCTTGCAGGAAATTTTCTTTCAGGTAATATACCTCATGAACTGGGTAACCTCAAAACAGTAACCCATATGGAAATTGGCTATAACTCTTATCAGGGTTCTATTCCATCCCCGTTTGGTAATATGAGCAAGCTTCAGTATCTTGATATAGCGGGTGCAAATCTATCCGGCCCCATACCAACCCAGCTCTCCAATCTAACCAATCTGCAATCACTTTTTCTCTTCACAAACCAGCTCACAGGATCAATACCAAGTGAATTTAGCAAAATCAAGCCTCTAACAGATTTAGATCTTTCAGACAACCTCATTTCCGGGTCCATTCCTGAAAGCTTTTCAGAGTTAAAGAACCTAAGACTACTCAGTCTCATGTACAATGATATGAATGGCACTGTACCAAAAGGCATTGCACAAATTCCATCCCTAGAAACTCTTCTCATTTGGAACAATCGCTTTTCTGGATTACTTCCACAGAACTTGGGCAGGAAGTCAAAACTCAAATGGGTGGATGCTTCCACAAACAATTTGATTGGTAACATACCACCAGACATTTGTGTGAGAAGAGCACTATTAAAACTAATCCTGTTTTCAAACAGATTTACAGGTGGTCTTCCATTGTCACTCTCCAATTGTTCTTCGCTTGTTCGCCTTCGACTAGAAGATAATTTGTTGTCTGGGGATATTTCTTTGAAATTCAGCCATCTTCCTGATATCTCATATGTTGATCTATCCCAGAACAATTTTGTCGGAGGAATTCCCTCTGATATTTCCCAAGCTAATAAACTAGAGTATTTCAATGTCACTTATAATCTGCAACTAGGAGGCATCATCCCTGCAAAATTATGGTCTATGCCACTTCTTCAAAACTTTTCAGCATCTTTTTGTGGTATTTTAGGCTATCTTCCACCGTTTGAGTCCTGCAAATCAGTCTCCGTTATTGAACTGGATAGGAACAACTTATCAGGAAGTGTCCCGAACAGTGTTTCCAATTGCCATGTTCTTGAGTATATAAACTTATCCAACAATAATCTATCAGGTCATATACCCGAGGAGCTAGCAAGTGTCACTGCTCTTGGTATTGTAGACCTATCAAGTAATAATTTCAATGGCTCAATACCAGCAAAGTTTGGTAGTTCTTCAAGTTTGCAGCTTCTTAATGTTTCTTTCAACCATATCTCCGGTTCAATTCCCAGAGGAAAGTCCTTCAAATTGATGGATAGCAGTGCATTTGTGGGAAATTCAGGGCTATGTGGAACACCTTTGAGATCATGCATTGTTTCAGTCGGAATATTGGGAAGCAAAGGCTCATGGAAGCTTGCACATATTGTGCTATTCTGTACAGGGTTGCTTATTCTTCTTGCAGCATTAGCTTTTGGGATACTTCATTTGAAACAGGGGATTAAAAGTCAATGGAACATGGTCTCATTTGTTGAACTCCCTCAGTTCACAGCAAATGATGTTTTGGCGAGCTTAAGTGCCACAAAGTCCAGAGAAGCGCCAGCCCCATCCCCTTCAGTTTCGAAAGTAGTTCTGCCTACAGGAATAACAGTTTTAGTTAAGAAGATTGAATGGGAAGCGAGAAGAATTAAGATTGTGTCGGAATTCATAACGCGATTAGGAAATGCAAGGCACAAGAATGTAATCAGACTGTTGGGCTTTTGCCATAATTACCATCTAGCTTATCTTCTATATGATTACTTACCCAATGGGAATTTGGCCGAGAGAGTTGGAATGAAAAGGGACTGGGCAGCTAAAGTCAGAACTGTAGTTGGCATCGCAAGAGGACTTTATTTCCTTCACCATGAATGTTATCCATCAATACCCCATGGGGACTTGAGGTTGAACAACATCGTATTTGATGAAAATACGGAACCCCACTTGGCTGAATTTGGGTTCAAACACGTGTTAAAGTTGAGCAAAGGCTCGTCTCCAACCACAACTTGCGAGTGGGAAACAGAATACAATGAAGACATAAAAGAGGAACTCTACATGGATGTCAACAATTTTGGGGAAATGATTCTAGAAATTTTATCTGACGGAAGGTTGACAAATGCAGCAGCTAGCATTCACAGAAAACCAAGGGAGGTTCTTCTAAGAGAAATTTGCAACGAGAATGAAGTTTGTTCTGCCAGTTCACTGCAAGAGATAAAACTGGTTCTTGATATTGCATTGCTTTGCACTAGAAGCACGCCATCTGATCGGCCAACCATGGAAGACATTTTGAAGCTTTTGCCAGGGTCAACGCAACTGGTAGATAGCAGAACTTCTAAGGAAGGATAG 2880 0.4069 MEIFRCLYFNLLATFMFFLAVLAMDPYSEALLNLKSELVDNGNSLHDWVVPSGRNLTGKSYACSWSGIKCNKNSTVVTSIDLSMKKLGGVLSGKQFSLFTKLADLNLSHNFFSGQLPVAIFNLTSLRSMDISRNNFSGQFPGEISSLQNLVVLDAFSNSFYGPLPAKLSQLENLKVLNLAGSYFKGPIPSEYGSFRSLEFLHLAGNFLSGNIPHELGNLKTVTHMEIGYNSYQGSIPSPFGNMSKLQYLDIAGANLSGPIPTQLSNLTNLQSLFLFTNQLTGSIPSEFSKIKPLTDLDLSDNLISGSIPESFSELKNLRLLSLMYNDMNGTVPKGIAQIPSLETLLIWNNRFSGLLPQNLGRKSKLKWVDASTNNLIGNIPPDICVRRALLKLILFSNRFTGGLPLSLSNCSSLVRLRLEDNLLSGDISLKFSHLPDISYVDLSQNNFVGGIPSDISQANKLEYFNVTYNLQLGGIIPAKLWSMPLLQNFSASFCGILGYLPPFESCKSVSVIELDRNNLSGSVPNSVSNCHVLEYINLSNNNLSGHIPEELASVTALGIVDLSSNNFNGSIPAKFGSSSSLQLLNVSFNHISGSIPRGKSFKLMDSSAFVGNSGLCGTPLRSCIVSVGILGSKGSWKLAHIVLFCTGLLILLAALAFGILHLKQGIKSQWNMVSFVELPQFTANDVLASLSATKSREAPAPSPSVSKVVLPTGITVLVKKIEWEARRIKIVSEFITRLGNARHKNVIRLLGFCHNYHLAYLLYDYLPNGNLAERVGMKRDWAAKVRTVVGIARGLYFLHHECYPSIPHGDLRLNNIVFDENTEPHLAEFGFKHVLKLSKGSSPTTTCEWETEYNEDIKEELYMDVNNFGEMILEILSDGRLTNAAASIHRKPREVLLREICNENEVCSASSLQEIKLVLDIALLCTRSTPSDRPTMEDILKLLPGSTQLVDSRTSKEG 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1262 959 Pfam Protein tyrosine and serine/threonine kinase 714 943 IPR001245 GO:0004672|GO:0006468
Dere03g1262 959 ProSiteProfiles Protein kinase domain profile. 682 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1262 959 Gene3D Ribonuclease Inhibitor 473 627 IPR032675 -
Dere03g1262 959 Gene3D Ribonuclease Inhibitor 224 472 IPR032675 -
Dere03g1262 959 PANTHER UNNAMED PRODUCT 170 881 - -
Dere03g1262 959 Gene3D Phosphorylase Kinase; domain 1 702 766 - -
Dere03g1262 959 FunFam Leucine-rich repeat receptor-like protein kinase 24 189 - -
Dere03g1262 959 ProSitePatterns Tyrosine protein kinases specific active-site signature. 807 819 IPR008266 GO:0004672|GO:0006468
Dere03g1262 959 FunFam Leucine-rich repeat receptor-like protein kinase TDR 682 766 - -
Dere03g1262 959 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Dere03g1262 959 Gene3D Transferase(Phosphotransferase) domain 1 767 956 - -
Dere03g1262 959 FunFam Leucine-rich repeat receptor-like protein kinase TDR 190 293 - -
Dere03g1262 959 SUPERFAMILY RNI-like 79 401 - -
Dere03g1262 959 SUPERFAMILY RNI-like 308 598 - -
Dere03g1262 959 Pfam Leucine rich repeat 278 327 IPR001611 GO:0005515
Dere03g1262 959 Gene3D Ribonuclease Inhibitor 26 146 IPR032675 -
Dere03g1262 959 Gene3D Ribonuclease Inhibitor 147 223 IPR032675 -
Dere03g1262 959 FunFam Leucine-rich repeat receptor-like protein kinase TDR 767 952 - -
Dere03g1262 959 FunFam Leucine-rich repeat receptor-like protein kinase TDR 312 626 - -
Dere03g1262 959 SUPERFAMILY Protein kinase-like (PK-like) 706 944 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1262 Dere-ChrDere03 20631017 20634349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1262 6 944 Receptor kinase-like Gene Family AT5G51350 53.263 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere03g1262 PK_Tyr_Ser-Thr 3.4e-17 CL0016