Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1248 ATGAATGGAAGAAGCAAGATATGGTCCATAGCTCGGATTAGAATGTGTTGCACAGAGAAGAAGGGTTTCTGCCTGCGGCTCGTGTACACCAGCTTCCTCTGCATCGCATACTTCAGTCTAAGAGCTGCAACCATGGCTGAACAAACTGAGAAGGCTTTTCTGAAGCAACCAAAAGTGTTTCTATGCTCGAAGAAATCTGGGAAGGGAAAGAGGCCCGGGAAAGGTGGGAATCGCTTTTGGAAGTCCATTGGGCTTGGATTCAAGACTCCCAGAGAAGCTATCGAAGGAACCTACATTGATAAGAAGTGCCCGTTCACTGGCACTGTTTCTATCAGGGGTCGTATCCTAGCTGGCACTTGTCATAGTGCTAAGATGACAAGAACTATTATTGTTAGAAGGAATTATCTTCATTTTGTCAAGAAGTACCAGAGATACGAGAAGAGGCACTCAAACATTCCTGCTCACATATCACCTTGCTTTCGTGTAAAGGAAGGAGATCATGTTATTATCGGCCAATGCAGGCCAATCTCAAAGACAGTGAGGTTCAACGTGTTAAAAGTGATTCCAGCTGGATCTTCTGGTGGTGTGAAGAAGGCATTCACTGGAGCGTGA 612 0.4542 MNGRSKIWSIARIRMCCTEKKGFCLRLVYTSFLCIAYFSLRAATMAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMTRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGSSGGVKKAFTGA 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1248 203 ProSitePatterns Ribosomal protein S17 signature. 165 177 IPR019979 GO:0003735|GO:0005840|GO:0006412
Dere03g1248 203 Pfam Ribosomal_S17 N-terminal 48 116 IPR032440 -
Dere03g1248 203 Pfam Ribosomal protein S17 118 186 IPR000266 GO:0003735|GO:0005840|GO:0006412
Dere03g1248 203 SUPERFAMILY Nucleic acid-binding proteins 112 191 IPR012340 -
Dere03g1248 203 FunFam 40S ribosomal protein S11 45 202 - -
Dere03g1248 203 PRINTS Ribosomal protein S17 family signature 132 155 IPR000266 GO:0003735|GO:0005840|GO:0006412
Dere03g1248 203 PRINTS Ribosomal protein S17 family signature 165 175 IPR000266 GO:0003735|GO:0005840|GO:0006412
Dere03g1248 203 PRINTS Ribosomal protein S17 family signature 175 182 IPR000266 GO:0003735|GO:0005840|GO:0006412
Dere03g1248 203 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 54 193 IPR000266 GO:0003735|GO:0005840|GO:0006412
Dere03g1248 203 NCBIfam 30S ribosomal protein S17 98 187 IPR028333 -
Dere03g1248 203 Gene3D - 34 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1248 Dere-ChrDere03 20407636 20411461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1248 45 202 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 91.772 6.44e-97 276