Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1236 ATGGGACGCGTTCGTACGAAGACCGTGAAGAAGTCATCGCGACAAGTCATCGAGAGGTACTATTCTCGAATGACGTTAGATTTCCACACGAACAAGAAGATTCTTGAGGAGGTGGCTCTCATACCCTCCAAGAGACTCCGGAACAAGATCGCCGGTTTCTCTACGCATCTCATGAAGAGGATCCAGAAGGGTCCTGTTCGTGGTATTTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGTCGTATGGACTTTGTGCCTGATGTTTCTGCCATTAAGACTGAGCAAATTGAGGTCGATAAGGAGACGCTTGACATGCTCAATGCTCTGGGCATGAATGATATTCCTGGTGTCGTCCAAGTTGACCCCGTGCCTGCGCCACAGGTGGGATATGGCCGGGGTGGTTTTGGTGGGCCTGCTAGGAGGACTTGGATTATCCAACCTTCAATCAATGCACAATCAGGTTATCATTTCCTTTGCACTTACCACTACTATTCTTAG 498 0.5 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLNALGMNDIPGVVQVDPVPAPQVGYGRGGFGGPARRTWIIQPSINAQSGYHFLCTYHYYS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1236 165 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Dere03g1236 165 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Dere03g1236 165 FunFam 40S ribosomal protein S17 1 62 - -
Dere03g1236 165 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Dere03g1236 165 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Dere03g1236 165 PANTHER 40S RIBOSOMAL PROTEIN S17 1 121 IPR001210 GO:0003735|GO:0005840|GO:0006412
Dere03g1236 165 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1236 Dere-ChrDere03 20208464 20210111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1236 1 133 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 82.222 6.10e-77 224