Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1222 ATGATTGTGACTTTGACCAGTTTGAAGAATTCGAAGGTACTGCATCTGATGTTTCCGGGGATTCAAGTGTCACACATGGGATATAATGAAGCTTACTTCAATGAAGAAAATCGGTGCTTTTACCCTCCAATATCAGCAAAAATAGCAAAAGTGGAAAAGACTGGATATTCTGGAAGTGATTTACAAGTGTTGTGTGAAGAAGCAGCAATGATGCCGATTAGAGAGTTGTGTTCTGACATTCTTACTGTTAAGGCAAATCAGGTGAATCAGATTGAAGTTAACATTTGTATAATGGCTATGGCTAATCTGAAATCTTTAATTCCATTTAATCCATCAAATGCTAGAAAAAGTGCGTTGGAAATGAATTGTCAAAGAACAATTACCACAGATAAAGATGTAAGCCTGAAATCTAGTCGAGCATCTGGTGGAGATTATGATGCAAAATTAGTTGAAACAATTAACACTGCCATAGTAGATAGAAGCCCTTCTGTTAGATGGGAAGATGTTGGTTTGCTTCTCTTTGGTCCACTTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCTTCAGAATCAGAAGCAACATTGTTTAACGTATCTACAGCATCGTTGACATCAAAATGGGTTGGTGAAGGTGAAAAGCTTGTCTGGACTCTATTCATGGTAGCTATTTCCAGACAACCATCTGTGATTTTCATTGATGAGGACATTACCATTAAGATAATATCATTTTCTCAGCAAGGGCCAAGAACTATATGCATTCTTTTTGCAAATGGAGTCATATCAAGTGTCACACTTCATCATCCTGATTCTTCTAGGGGAACATTGACATATGAGGTGCAGCATATTTTGTTTTCCAAATAA 864 0.3738 MIVTLTSLKNSKVLHLMFPGIQVSHMGYNEAYFNEENRCFYPPISAKIAKVEKTGYSGSDLQVLCEEAAMMPIRELCSDILTVKANQVNQIEVNICIMAMANLKSLIPFNPSNARKSALEMNCQRTITTDKDVSLKSSRASGGDYDAKLVETINTAIVDRSPSVRWEDVGLLLFGPLGNGKTMLAKAVASESEATLFNVSTASLTSKWVGEGEKLVWTLFMVAISRQPSVIFIDEDITIKIISFSQQGPRTICILFANGVISSVTLHHPDSSRGTLTYEVQHILFSK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1222 287 Gene3D - 167 235 IPR027417 -
Dere03g1222 287 Pfam AAA+ lid domain 48 76 IPR041569 -
Dere03g1222 287 ProSiteProfiles PPC domain profile profile. 221 287 IPR005175 -
Dere03g1222 287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 235 IPR027417 -
Dere03g1222 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 233 276 - -
Dere03g1222 287 PANTHER AAA DOMAIN-CONTAINING 53 95 - -
Dere03g1222 287 Gene3D - 44 101 - -
Dere03g1222 287 Pfam ATPase family associated with various cellular activities (AAA) 171 235 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1222 Dere-ChrDere03 19884740 19887671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1222 217 279 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 63.077 6.67e-19 83.6