Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1213 ATGATGAGGTTCTTCAATTTTATCTGGTTTCTCTTGGCAAATGAGCTTCCAAAGATCATGAAGAAGGTCAAGAGAAAGGTTGGCAAGTATGAGGTGGGTCGAACCATCGGCGAAGGTACCTTCGCCAAGGTTAAATTTGCCAAAAACGTAGAGACAGGGGAGAGTGTGGCTATTAAGGTGATGGCTAAGGACACCATTCTTAAGCACAAAATGGTTGAACAGATTAGAAGAGAGATATCCATCATGAAAATTGTCAGGCATCCTAATATAGTTAGGTTGCATGAGGTTTTGGCCAGCCAGACTAAGATTTACATAGTTCTTGAGTTTGTCATGGGAGGTGAACTATATGATAAAATTGTTCAGCAAGGAAAGCTTTCAGAAAATGAATCTAGGCGCTACTTTCAACAACTCATCGATGCTGTATCTCATTGTCATAGTAAGGGTGTGTACCATAGGGACTTGAAGCCTGAAAATCTACTTCTTGATGCTTTTGGGAATCTGAAGGTTTCTGACTTTGGACTGAGTGCCTTGACTAAGCAGGGTGTTAGCCTCCTCCACACCACATGTGGAACACCAAATTATGTTGCCCCTGAGGTGCTCAGCAATCTAGGTTATGATGGTGCAGCAGCTGATGTTTGGTCATGTGGAGTGATCCTCTTTGTTCTCATGGCCGGATATCTTCCTTTTGAGGCAGCAGACTTATCAACCTTGTTCAAAATGATTAACGCTGCTGAATTTACTTGCCCATTCTGGTTTTCTGCTGGAGCAAAGACATTATTACGTAAAATACTGGATCCAAATCCTAAAACACGTATAGGAATTGAGGAAATAAGGAAAGACCCATGGTTCAGGATAAGTTATATTCCTACTAAACTCAGGGAAGATGAGGAAGTAAACTTGGATGATGTTCAGGCTGTTTTCAATGATATTGAGGACAAGTATGTAGCTGAAAAGTTGGAACATACTGAGGGAGGTCCTTTGACAATGAATGCATTTGAGATGATAACCTTATCACAAGGATTGAATCTATCAGCACTGTTTGACAGGCGTCAGGACTATGTAAAGCGACAAACACGTTTTGTTTCTCGTAAACCAGCAAAAGCTATAACTGCATCTATTGAAACTGTTGCTGAATCAATGGGCCTTAAGGTCCATTCTCGCAATTACAAGATGAGACTTGAAGGAGTTTCTGCTAAGGCCGGACAACTTGCTGTGGTTCTGGAGGTCTTTGAAGTTGCACCAATCCTTTTCATGGTAGACGTTCGAAAGGCTGCTGGTGATACTCTTGAATATCACAAGTTTTACAAGAATCTTTGTGAAAAACTAGGAAGCATTATTTGGAGACCGGCAGAGACCAGGCCAAATCCTAGTATGCTTAGACAAATGACTTGCTAA 1395 0.4136 MMRFFNFIWFLLANELPKIMKKVKRKVGKYEVGRTIGEGTFAKVKFAKNVETGESVAIKVMAKDTILKHKMVEQIRREISIMKIVRHPNIVRLHEVLASQTKIYIVLEFVMGGELYDKIVQQGKLSENESRRYFQQLIDAVSHCHSKGVYHRDLKPENLLLDAFGNLKVSDFGLSALTKQGVSLLHTTCGTPNYVAPEVLSNLGYDGAAADVWSCGVILFVLMAGYLPFEAADLSTLFKMINAAEFTCPFWFSAGAKTLLRKILDPNPKTRIGIEEIRKDPWFRISYIPTKLREDEEVNLDDVQAVFNDIEDKYVAEKLEHTEGGPLTMNAFEMITLSQGLNLSALFDRRQDYVKRQTRFVSRKPAKAITASIETVAESMGLKVHSRNYKMRLEGVSAKAGQLAVVLEVFEVAPILFMVDVRKAAGDTLEYHKFYKNLCEKLGSIIWRPAETRPNPSMLRQMTC 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1213 464 FunFam Non-specific serine/threonine protein kinase 23 324 - -
Dere03g1213 464 CDD CIPK_C 330 442 - -
Dere03g1213 464 Pfam NAF domain 326 385 IPR004041 GO:0007165
Dere03g1213 464 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 24 440 - -
Dere03g1213 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Dere03g1213 464 SUPERFAMILY Protein kinase-like (PK-like) 27 284 IPR011009 -
Dere03g1213 464 ProSiteProfiles NAF domain profile. 324 348 IPR018451 GO:0007165
Dere03g1213 464 FunFam Non-specific serine/threonine protein kinase 21 109 - -
Dere03g1213 464 ProSitePatterns Protein kinases ATP-binding region signature. 36 68 IPR017441 GO:0005524
Dere03g1213 464 Coils Coil 293 313 - -
Dere03g1213 464 ProSiteProfiles Protein kinase domain profile. 30 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1213 464 SMART serkin_6 30 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1213 464 FunFam Non-specific serine/threonine protein kinase 323 448 - -
Dere03g1213 464 Gene3D Transferase(Phosphotransferase) domain 1 110 289 - -
Dere03g1213 464 Pfam Protein kinase domain 30 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1213 464 Gene3D Phosphorylase Kinase; domain 1 20 109 - -
Dere03g1213 464 Gene3D Kinase associated domain 1, KA1 323 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1213 Dere-ChrDere03 19737961 19746066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1213 20 391 CBL-interacting serine-threonine protein kinases AT5G35410 73.656 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Dere03g1213 Pkinase 2.3e-73 CL0016