Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1211 ATGGATGTTAATTCTGAGCAACTCTGCTATATCCCCTGCAAGTTTTGCAACATTGTTCTTGCGGTGAGTGTTCCATGCAATAGCCTGTTTGACATTGTGACCGTCCGATGTGGTCACTGCACAAATCTGTGGTCCATGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGCTTCTGGGTTCTCCAATTTTGAGTATAGGATTGAGACAGGTTCCTCTTCAAGATGCAACAATGGGATTGCAATGCGAGCACCAACCACACATACTGCAACTGAGGAAAGGGTTGTGAATAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCATATAATCAGTTCATAAAAGAAGAGATCCAGAGGATCAAGGCCAATAACCCAGATATAAGTCACAGGGAAGCTTTCAGTACAGCTGCAAAGAATTGGGCACATTTCCCTCATATTCACTTCGGGTTGATGCTGGAGGCCAATAATAAAACAAGGATGGAGAATGGAATAATTCGGAGAAGCATTTAA 525 0.4533 MDVNSEQLCYIPCKFCNIVLAVSVPCNSLFDIVTVRCGHCTNLWSMNMAAAFQSLSWQDVQASGFSNFEYRIETGSSSRCNNGIAMRAPTTHTATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNKTRMENGIIRRSI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1211 174 CDD HMG-box_SF 109 145 - -
Dere03g1211 174 Pfam YABBY protein 4 155 IPR006780 GO:0007275
Dere03g1211 174 SUPERFAMILY HMG-box 95 148 IPR036910 -
Dere03g1211 174 Gene3D High mobility group box domain 92 151 IPR036910 -
Dere03g1211 174 FunFam axial regulator YABBY 5-like 93 151 - -
Dere03g1211 174 PANTHER PROTEIN YABBY 6-RELATED 4 164 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1211 Dere-ChrDere03 19588387 19592298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1211 5 165 C2C2-YABBY Transcription Factor Family AT2G26580 75.155 2.76e-87 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Dere03g1211 YABBY 4.4e-69 CL0114