Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1195 ATGGAGAACAAGTGCGGGTGCTGGGCTGTTCTGAAACGCGGCGCTAGAGGTGCGTGCAATCCCTCTGCTTCCAGACACTCTGCTAATACTATTCCTCGTACTAGTCTCGTTTATGATGCAGCAACTGAGACGCGATACCTGAATGCTAGCAATCGAGAACTATGTCCTCCCAATGAAGCTCAATTATCTTCTGATAATCCTGATCCTCCACCTCCGGAAGATAAGGCTCCTCGTCAGCTCCTTCAGTTCAGTTTCCAGGAACTAAAAGCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGGGAGGGTGGTTTTGGTTATGTTTTCAAAGGATGGATTGAGGAAAATGGGACAGCCCCAGCAAAACCTGGGTCAGGGATTACGGTGGCTGTCAAAAGCTTGAAGCCTGATGGTCTCCAGGGTCATAGAGAATGGGTGGCTGAAGTTGACTTCCTTGGACAGCTTCACCATCCTAACCTTGTCAAACTTATTGGTTACTGCATAGAAGATGATCAGCGACTTCTTGTTTATGAGTTTATGACCCGTGGAAGTCTAGAAAATCATTTGTTCAGAAGAACTGTAGCTCTTCCATGGTCCAATAGGGTTAAGATTGCGCTTGGTGCAGCAAAAGGATTGGCATTCCTTCATAATGGTCCAGAGCCAGTCATTTATAGAGATTTTAAAACATCAAATATTTTGCTTGATTCGGAGTATAATGCAAAGCTTTCAGATTTTGGTCTAGCAAAAGCTGGGCCTCAAGGTGACAAGACACATGTTTCTACCAGAGTTGTTGGAACATATGGTTATGCAGCTCCAGAATATGTCATGACAGGACACTTGACAGCCAAAAGTGATGTTTATAGCTTTGGAGTCGTTTTACTTGAGATTTTAACAGGGCGAAGATCGATGGACAGGAAGCGCCCAAGTGGGGAACAGAATCTTGTATCATGGGCTAGGCCATATTTGGCTGACAAGCGAAAACTGTACCAGCTTGTGGATCCTCGTTTGGAACTGAACTATTCTCTTAAGGGGGTGCAGAAGATTTCTCAGTTAGCTTATAATTGCCTCAGTAGGGACCCTAAATGCCGTCCTATCATGGATGAAGTTGTGAAGGTTTTGGCTCCATTGCAGGATCTTGACGACCTTGCTATTTTATCTTACCACTCTCGTTCCTCTCAACAAGGAAGAAGAAAAAAGAAATCAGACGGAACTCCAAAGCTCAACTACACACAAACCAAGAGCATCAAGGCCTCTCCCATGAATACTGGGAAGCAGCATAAGATGATAATTGATAAGGATTAA 1305 0.4429 MENKCGCWAVLKRGARGACNPSASRHSANTIPRTSLVYDAATETRYLNASNRELCPPNEAQLSSDNPDPPPPEDKAPRQLLQFSFQELKAATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVALPWSNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDSEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDRKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYNCLSRDPKCRPIMDEVVKVLAPLQDLDDLAILSYHSRSSQQGRRKKKSDGTPKLNYTQTKSIKASPMNTGKQHKMIIDKD 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1195 434 CDD STKc_IRAK 101 377 - -
Dere03g1195 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Dere03g1195 434 Gene3D Phosphorylase Kinase; domain 1 72 180 - -
Dere03g1195 434 FunFam Probable serine/threonine-protein kinase PBL8 181 395 - -
Dere03g1195 434 MobiDBLite consensus disorder prediction 55 77 - -
Dere03g1195 434 FunFam Serine/threonine-protein kinase BIK1 64 180 - -
Dere03g1195 434 PANTHER OS01G0588500 PROTEIN-RELATED 76 378 - -
Dere03g1195 434 SUPERFAMILY Protein kinase-like (PK-like) 78 379 IPR011009 -
Dere03g1195 434 MobiDBLite consensus disorder prediction 391 434 - -
Dere03g1195 434 MobiDBLite consensus disorder prediction 406 422 - -
Dere03g1195 434 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672|GO:0006468
Dere03g1195 434 ProSiteProfiles Protein kinase domain profile. 95 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1195 434 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524
Dere03g1195 434 Gene3D Transferase(Phosphotransferase) domain 1 181 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1195 Dere-ChrDere03 19227913 19231318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1195 83 389 Glycoside Hydrolase AT3G07070 54.019 2.20e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere03g1195 PK_Tyr_Ser-Thr 2.7e-48 CL0016